Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   STACADC2_RS08470 Genome accession   NZ_LT604076
Coordinates   1594644..1595744 (-) Length   366 a.a.
NCBI ID   WP_157659050.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ACA-DC     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1589644..1600744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STACADC2_RS08430 (STACADC2_1631) - 1590256..1590453 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  STACADC2_RS08435 (STACADC2_1632) - 1590702..1591895 (-) 1194 WP_087010197.1 acetate kinase -
  STACADC2_RS08440 (STACADC2_1633) comYH 1591951..1592907 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STACADC2_RS08445 (STACADC2_1634) comGG 1592952..1593269 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STACADC2_RS08450 (STACADC2_1635) comYF 1593247..1593684 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  STACADC2_RS08455 (STACADC2_1636) comGE 1593668..1593961 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STACADC2_RS08460 (STACADC2_1637) comYD 1593933..1594361 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STACADC2_RS08465 (STACADC2_1638) comYC 1594321..1594647 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STACADC2_RS08470 (STACADC2_1639) comYB 1594644..1595744 (-) 1101 WP_157659050.1 competence type IV pilus assembly protein ComGB Machinery gene
  STACADC2_RS08475 (STACADC2_1640) comGA/cglA/cilD 1595626..1596567 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  STACADC2_RS08480 (STACADC2_1641) - 1596648..1597010 (-) 363 WP_087010198.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41827.94 Da        Isoelectric Point: 10.1084

>NTDB_id=1145114 STACADC2_RS08470 WP_157659050.1 1594644..1595744(-) (comYB) [Streptococcus thermophilus strain ACA-DC]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKEASLSLM
KESLIRGDRLDQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVTTYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1145114 STACADC2_RS08470 WP_157659050.1 1594644..1595744(-) (comYB) [Streptococcus thermophilus strain ACA-DC]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAGCATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGGATCAGATGTTAGCGTTAGTAGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGACGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTTATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.678

93.443

0.511
  comYB Streptococcus mutans UA159

54.678

93.443

0.511
  comYB Streptococcus gordonii str. Challis substr. CH1

50.877

93.443

0.475
  comGB/cglB Streptococcus mitis NCTC 12261

50.151

90.437

0.454
  comGB/cglB Streptococcus mitis SK321

49.394

90.164

0.445
  comGB/cglB Streptococcus pneumoniae Rx1

49.39

89.617

0.443
  comGB/cglB Streptococcus pneumoniae D39

49.39

89.617

0.443
  comGB/cglB Streptococcus pneumoniae R6

49.39

89.617

0.443
  comGB/cglB Streptococcus pneumoniae TIGR4

49.39

89.617

0.443
  comGB Lactococcus lactis subsp. cremoris KW2

45.455

90.164

0.41

Multiple sequence alignment