Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STACADC2_RS08440 Genome accession   NZ_LT604076
Coordinates   1591951..1592907 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain ACA-DC     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1586951..1597907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STACADC2_RS08410 (STACADC2_1627) proC 1587501..1588271 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  STACADC2_RS08415 (STACADC2_1628) - 1588301..1588963 (-) 663 WP_087010194.1 CPBP family intramembrane glutamic endopeptidase -
  STACADC2_RS08420 (STACADC2_1629) - 1589066..1589509 (-) 444 WP_087010195.1 CAAX protease -
  STACADC2_RS10180 (STACADC2_1630) - 1589583..1590008 (-) 426 WP_087010196.1 CPBP family intramembrane glutamic endopeptidase -
  STACADC2_RS08430 (STACADC2_1631) - 1590256..1590453 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  STACADC2_RS08435 (STACADC2_1632) - 1590702..1591895 (-) 1194 WP_087010197.1 acetate kinase -
  STACADC2_RS08440 (STACADC2_1633) comYH 1591951..1592907 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STACADC2_RS08445 (STACADC2_1634) comGG 1592952..1593269 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STACADC2_RS08450 (STACADC2_1635) comYF 1593247..1593684 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  STACADC2_RS08455 (STACADC2_1636) comGE 1593668..1593961 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STACADC2_RS08460 (STACADC2_1637) comYD 1593933..1594361 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STACADC2_RS08465 (STACADC2_1638) comYC 1594321..1594647 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STACADC2_RS08470 (STACADC2_1639) comYB 1594644..1595744 (-) 1101 WP_157659050.1 competence type IV pilus assembly protein ComGB Machinery gene
  STACADC2_RS08475 (STACADC2_1640) comGA/cglA/cilD 1595626..1596567 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  STACADC2_RS08480 (STACADC2_1641) - 1596648..1597010 (-) 363 WP_087010198.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=1145110 STACADC2_RS08440 WP_011226622.1 1591951..1592907(-) (comYH) [Streptococcus thermophilus strain ACA-DC]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1145110 STACADC2_RS08440 WP_011226622.1 1591951..1592907(-) (comYH) [Streptococcus thermophilus strain ACA-DC]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGTCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment