Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D5R51_RS02015 Genome accession   NZ_LS997867
Coordinates   409817..411043 (-) Length   408 a.a.
NCBI ID   WP_000648506.1    Uniprot ID   A0A0E3W4T9
Organism   Vibrio paracholerae strain NCTC 30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 404817..416043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS01995 (SAMEA104470976_00397) yacG 407153..407350 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  D5R51_RS02000 (SAMEA104470976_00398) zapD 407507..408247 (-) 741 WP_119090808.1 cell division protein ZapD -
  D5R51_RS02005 (SAMEA104470976_00399) coaE 408279..408887 (-) 609 WP_162891880.1 dephospho-CoA kinase -
  D5R51_RS02010 (SAMEA104470976_00400) pilD 408884..409759 (-) 876 WP_000418747.1 A24 family peptidase Machinery gene
  D5R51_RS02015 (SAMEA104470976_00401) pilC 409817..411043 (-) 1227 WP_000648506.1 type II secretion system F family protein Machinery gene
  D5R51_RS02020 (SAMEA104470976_00402) pilB 411086..412774 (-) 1689 WP_000957200.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D5R51_RS02025 (SAMEA104470976_00403) pilA 412781..413218 (-) 438 WP_119090810.1 type IV pilin protein Machinery gene
  D5R51_RS02030 (SAMEA104470976_00404) nadC 413463..414353 (-) 891 WP_119090811.1 carboxylating nicotinate-nucleotide diphosphorylase -
  D5R51_RS02040 (SAMEA104470976_00405) ampD 414655..415200 (+) 546 WP_119090812.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  D5R51_RS02045 (SAMEA104470976_00406) fldB 415469..415987 (-) 519 WP_000690112.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45090.38 Da        Isoelectric Point: 10.3424

>NTDB_id=1143334 D5R51_RS02015 WP_000648506.1 409817..411043(-) (pilC) [Vibrio paracholerae strain NCTC 30]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKGKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1143334 D5R51_RS02015 WP_000648506.1 409817..411043(-) (pilC) [Vibrio paracholerae strain NCTC 30]
ATGAAAGCGACCCAAACCTTACCTCTGAAAAATTATCGCTGGAAAGGCATCAACAGCAACGGCAAAAAAGTTTCCGGCCA
GATGCTCGCCATCTCCGAAATCGAGGTGCGCGATAAACTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTCTCTTTATTGGCGCGCCTAACCCATCGCGTGAAAGGCAAAGACATCACGATTTTGACTCGGCAGTTGGCGACCATG
CTCACCACGGGCGTACCGATTGTGCAAGCCCTCAAGTTGGTGGGCGATAATCACCGTAAAGCTGAGATGAAATCGATTCT
GGCGCAAATCACCAAAAGCGTGGAAGCGGGCACGCCACTTTCCAAGGCGATGCGCACCGCCAGCGCCCATTTTGATACCT
TGTATGTCGATTTAGTGGAAACCGGAGAGATGTCCGGTAACTTACCTGAAGTGTTTGAGCGTTTGGCCACCTACCGCGAG
AAAAGCGAGCAACTACGCGCCAAGGTGATTAAAGCGCTCATCTACCCGAGTATGGTGGTATTGGTCGCGCTCGGGGTATC
CTACTTAATGCTCACCATGGTCATCCCAGAATTTGAAAGCATGTTTAAAGGCTTTGGTGCCGAGCTGCCTTGGTTTACGC
AGCAAGTGCTGAAACTCTCACACTGGGTGCAGGCTTACAGTTTATGGGCATTTATCGCCATCGCAGCAGCCATTTTTGGC
TTGAAAGCGCTGCGTAAAAACTCTTTCCAGATCCGTTTAAAAACCAGCCGCTTAGGGCTGAAATTTCCGATTATTGGCAA
TGTGCTCGCTAAGGCTTCCATCGCCAAATTCAGCCGCACTCTCGCCACCAGCTTTGCTGCGGGGATCCCAATTCTAGCCA
GTTTAAAAACCACCGCCAAAACCTCCGGCAATGTGCACTTTGAAACCGCGATTAATGAGGTGTACCGCGATACTGCTGCG
GGGATGCCGATGTACATTGCCATGCGCAATACCGACGCTTTTCCCGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGACAATTAGATGACATGCTCAACAAGGTCGCGACCATCTATGAATTTGAAGTCGATAACACAGTCGATAACTTGG
GCAAGATTCTTGAGCCGCTGATCATCGTGTTTCTTGGGACGGTCGTGGGCGGCTTAGTCGTCGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E3W4T9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.51

100

0.995
  pilC Vibrio campbellii strain DS40M4

74

98.039

0.725
  pilC Acinetobacter baumannii D1279779

42.647

100

0.426
  pilC Acinetobacter baylyi ADP1

42.015

99.755

0.419
  pilC Legionella pneumophila strain ERS1305867

42.211

97.549

0.412
  pilC Pseudomonas stutzeri DSM 10701

42.172

97.059

0.409
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4

Multiple sequence alignment