Detailed information NTG1142973

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: DQL00_RS06525
• Genome accession: NZ_LS483523
• Coordinates: 1208966..1209436 (+)
• Length: 156 a.a.
• NCBI ID: WP_000609607.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 4041STDY6836169
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1203966..1214436

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL00_RS06490	-	1204249..1204797 (-)	549	WP_000039617.1	NADPH-dependent FMN reductase	-
DQL00_RS06500	-	1205118..1205606 (+)	489	WP_000747264.1	DUF5590 domain-containing protein	-
DQL00_RS06505	-	1205603..1206790 (+)	1188	WP_000777774.1	pyridoxal phosphate-dependent aminotransferase	-
DQL00_RS06510	-	1206783..1207148 (+)	366	WP_000565213.1	VOC family protein	-
DQL00_RS06515	asnS	1207168..1208511 (+)	1344	WP_069287011.1	asparagine--tRNA ligase	-
DQL00_RS06520	rpsF	1208664..1208954 (+)	291	WP_001151785.1	30S ribosomal protein S6	-
DQL00_RS06525	ssbA	1208966..1209436 (+)	471	WP_000609607.1	single-stranded DNA-binding protein SsbA	Machinery gene
DQL00_RS06530	rpsR	1209468..1209707 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
DQL00_RS06535	-	1210001..1211401 (+)	1401	WP_000339023.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
DQL00_RS06540	-	1211403..1211762 (+)	360	WP_000689596.1	S1 RNA-binding domain-containing protein	-
DQL00_RS06545	-	1211816..1212565 (+)	750	WP_000390784.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
DQL00_RS06550	-	1212555..1212854 (+)	300	WP_000349602.1	GIY-YIG nuclease family protein	-
DQL00_RS06555	-	1212925..1213860 (+)	936	WP_000036043.1	manganese-dependent inorganic pyrophosphatase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17351.21 Da
• Isoelectric Point: 5.2065

>NTDB_id=1142973 DQL00_RS06525 WP_000609607.1 1208966..1209436(+) (ssbA) [Streptococcus pneumoniae strain 4041STDY6836169]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=1142973 DQL00_RS06525 WP_000609607.1 1208966..1209436(+) (ssbA) [Streptococcus pneumoniae strain 4041STDY6836169]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.814	100	0.615
ssb	Latilactobacillus sakei subsp. sakei 23K	54.118	100	0.59
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.66	67.949	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssbB/cilA	Streptococcus pneumoniae TIGR4	53.211	69.872	0.372
ssbB/cilA	Streptococcus mitis SK321	52.294	69.872	0.365
ssbB/cilA	Streptococcus mitis NCTC 12261	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae Rx1	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae D39	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae R6	52.294	69.872	0.365