Detailed information
Bioinformatically predicted
Overview
| Name | comYA | Type | Machinery gene |
| Locus tag | DQL26_RS00665 | Genome accession | NZ_LS483521 |
| Coordinates | 102040..102993 (+) | Length | 317 a.a. |
| NCBI ID | WP_030126921.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain NCTC8316 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 97040..107993
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL26_RS00655 (NCTC8316_00132) | rpoC | 97789..101430 (+) | 3642 | WP_111692970.1 | DNA-directed RNA polymerase subunit beta' | - |
| DQL26_RS00660 (NCTC8316_00133) | - | 101582..101947 (+) | 366 | WP_002986560.1 | DUF1033 family protein | - |
| DQL26_RS00665 (NCTC8316_00134) | comYA | 102040..102993 (+) | 954 | WP_030126921.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQL26_RS00670 (NCTC8316_00135) | comYB | 102929..103963 (+) | 1035 | WP_011054115.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DQL26_RS00675 (NCTC8316_00136) | comYC | 103965..104291 (+) | 327 | WP_002986552.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQL26_RS00680 (NCTC8316_00137) | comGD | 104266..104694 (+) | 429 | WP_109991901.1 | competence type IV pilus minor pilin ComGD | - |
| DQL26_RS00685 (NCTC8316_00138) | comGE | 104651..104935 (+) | 285 | WP_269460045.1 | competence type IV pilus minor pilin ComGE | - |
| DQL26_RS00690 (NCTC8316_00139) | comYF | 104928..105362 (+) | 435 | WP_002987783.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DQL26_RS00695 (NCTC8316_00140) | comGG | 105346..105672 (+) | 327 | WP_009880358.1 | competence type IV pilus minor pilin ComGG | - |
| DQL26_RS00700 (NCTC8316_00141) | comYH | 105770..106723 (+) | 954 | WP_002987790.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DQL26_RS00705 (NCTC8316_00142) | - | 106782..107978 (+) | 1197 | WP_002987791.1 | acetate kinase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35528.92 Da Isoelectric Point: 8.8659
>NTDB_id=1142811 DQL26_RS00665 WP_030126921.1 102040..102993(+) (comYA) [Streptococcus pyogenes strain NCTC8316]
MVQALAKAILAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKFVAGMIVGEKRRCQVG
SCDYKLSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISS
YHQEAQVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRASLTGAMVFSTVHAK
SISGVYARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII
MVQALAKAILAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKFVAGMIVGEKRRCQVG
SCDYKLSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISS
YHQEAQVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRASLTGAMVFSTVHAK
SISGVYARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII
Nucleotide
Download Length: 954 bp
>NTDB_id=1142811 DQL26_RS00665 WP_030126921.1 102040..102993(+) (comYA) [Streptococcus pyogenes strain NCTC8316]
ATGGTACAAGCATTAGCAAAAGCTATTCTAGCAAAAGCTATTCTAGCAAAAGCTGAACAGGTTCAGGCACAAGATATTTA
TATTTTGCCAAGAGCAGATCAATATGATCTTTTTTTACGAATAGGAGATGAAAGGAGATTAGTTGATGTTTATCAGAGCG
ATCGGATGGCTCCTCTTATTAGTCACTTTAAATTCGTTGCAGGAATGATAGTTGGTGAAAAGAGACGTTGTCAGGTGGGT
TCATGTGATTATAAGCTTAGTAAAGATAAGCAGTTATCTTTGCGCTTATCTAGCGTGGGTGATTATCGCGGGCAAGAAAG
CTTAGTGATTCGTCTGCTTCATCATCAAAATAAAAGTGTACATTATTGGTTTGATGGATTGACAAAAGTAGCCAATCAGG
TTGGCGGTAGAGGGTTGTATTTATTTGCAGGACCAGTTGGGTCTGGGAAGACAACCTTGATGTACCAGCTGATTTCGAGT
TATCATCAAGAAGCACAGGTTATTAGTATAGAAGATCCTGTAGAAATTAAAAATCACCAGATTTTACAATTACAAGTGAA
TGATGATATTGGTATGACTTATGACAATTTGATCAAACTGTCTTTACGCCATCGACCAGATATTTTAGTTATTGGTGAGA
TTCGAGATAGTCAAACAGCAAGAGCCGTTATTAGGGCTAGTCTAACAGGTGCCATGGTTTTTTCAACGGTTCACGCTAAA
AGTATCTCGGGTGTTTATGCAAGATTGTTAGAACTTGGTGTAACGAAAGCAGAACTGTCTAATTGCTTAGCATTAATTGC
TTACCAAAGGTTACTTAATGGAGGAGCATTGATTGACTCTACTCAAAACGAATTTGAATATTATTCCTCATCGAACTGGA
ATCAACAAATTGATCAGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAG
ATGGTACAAGCATTAGCAAAAGCTATTCTAGCAAAAGCTATTCTAGCAAAAGCTGAACAGGTTCAGGCACAAGATATTTA
TATTTTGCCAAGAGCAGATCAATATGATCTTTTTTTACGAATAGGAGATGAAAGGAGATTAGTTGATGTTTATCAGAGCG
ATCGGATGGCTCCTCTTATTAGTCACTTTAAATTCGTTGCAGGAATGATAGTTGGTGAAAAGAGACGTTGTCAGGTGGGT
TCATGTGATTATAAGCTTAGTAAAGATAAGCAGTTATCTTTGCGCTTATCTAGCGTGGGTGATTATCGCGGGCAAGAAAG
CTTAGTGATTCGTCTGCTTCATCATCAAAATAAAAGTGTACATTATTGGTTTGATGGATTGACAAAAGTAGCCAATCAGG
TTGGCGGTAGAGGGTTGTATTTATTTGCAGGACCAGTTGGGTCTGGGAAGACAACCTTGATGTACCAGCTGATTTCGAGT
TATCATCAAGAAGCACAGGTTATTAGTATAGAAGATCCTGTAGAAATTAAAAATCACCAGATTTTACAATTACAAGTGAA
TGATGATATTGGTATGACTTATGACAATTTGATCAAACTGTCTTTACGCCATCGACCAGATATTTTAGTTATTGGTGAGA
TTCGAGATAGTCAAACAGCAAGAGCCGTTATTAGGGCTAGTCTAACAGGTGCCATGGTTTTTTCAACGGTTCACGCTAAA
AGTATCTCGGGTGTTTATGCAAGATTGTTAGAACTTGGTGTAACGAAAGCAGAACTGTCTAATTGCTTAGCATTAATTGC
TTACCAAAGGTTACTTAATGGAGGAGCATTGATTGACTCTACTCAAAACGAATTTGAATATTATTCCTCATCGAACTGGA
ATCAACAAATTGATCAGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYA | Streptococcus mutans UA140 |
60.759 |
99.685 |
0.606 |
| comYA | Streptococcus mutans UA159 |
60.759 |
99.685 |
0.606 |
| comGA/cglA | Streptococcus sobrinus strain NIDR 6715-7 |
60.586 |
96.845 |
0.587 |
| comYA | Streptococcus gordonii str. Challis substr. CH1 |
60.586 |
96.845 |
0.587 |
| comGA/cglA/cilD | Streptococcus mitis NCTC 12261 |
59.609 |
96.845 |
0.577 |
| comGA/cglA/cilD | Streptococcus pneumoniae Rx1 |
58.958 |
96.845 |
0.571 |
| comGA/cglA/cilD | Streptococcus pneumoniae D39 |
58.958 |
96.845 |
0.571 |
| comGA/cglA/cilD | Streptococcus pneumoniae R6 |
58.958 |
96.845 |
0.571 |
| comGA/cglA/cilD | Streptococcus pneumoniae TIGR4 |
58.958 |
96.845 |
0.571 |
| comGA | Lactococcus lactis subsp. cremoris KW2 |
50 |
99.685 |
0.498 |
| comGA | Latilactobacillus sakei subsp. sakei 23K |
39.655 |
91.483 |
0.363 |