Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL12_RS07960 Genome accession   NZ_LS483450
Coordinates   1483680..1484150 (-) Length   156 a.a.
NCBI ID   WP_000609607.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6583227     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1478680..1489150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL12_RS07930 - 1479255..1480190 (-) 936 WP_000036043.1 manganese-dependent inorganic pyrophosphatase -
  DQL12_RS07935 - 1480261..1480560 (-) 300 WP_000349602.1 GIY-YIG nuclease family protein -
  DQL12_RS07940 - 1480550..1481299 (-) 750 WP_000390784.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DQL12_RS07945 - 1481353..1481712 (-) 360 WP_000689596.1 S1 RNA-binding domain-containing protein -
  DQL12_RS07950 - 1481714..1483114 (-) 1401 WP_000339024.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQL12_RS07955 rpsR 1483409..1483648 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  DQL12_RS07960 ssbA 1483680..1484150 (-) 471 WP_000609607.1 single-stranded DNA-binding protein SsbA Machinery gene
  DQL12_RS07965 rpsF 1484162..1484452 (-) 291 WP_001151785.1 30S ribosomal protein S6 -
  DQL12_RS07970 asnS 1484605..1485948 (-) 1344 WP_000167152.1 asparagine--tRNA ligase -
  DQL12_RS11700 - 1485967..1486332 (-) 366 WP_000565218.1 VOC family protein -
  DQL12_RS07975 - 1486325..1487512 (-) 1188 WP_000777779.1 pyridoxal phosphate-dependent aminotransferase -
  DQL12_RS07980 - 1487509..1487997 (-) 489 WP_000747253.1 DUF5590 domain-containing protein -
  DQL12_RS07990 - 1488318..1488866 (+) 549 WP_000039618.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17351.21 Da        Isoelectric Point: 5.2065

>NTDB_id=1141985 DQL12_RS07960 WP_000609607.1 1483680..1484150(-) (ssbA) [Streptococcus pneumoniae strain 4041STDY6583227]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1141985 DQL12_RS07960 WP_000609607.1 1483680..1484150(-) (ssbA) [Streptococcus pneumoniae strain 4041STDY6583227]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.211

69.872

0.372
  ssbB/cilA Streptococcus mitis SK321

52.294

69.872

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae Rx1

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae D39

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae R6

52.294

69.872

0.365

Multiple sequence alignment