Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQK99_RS07515 Genome accession   NZ_LS483448
Coordinates   1402388..1402858 (-) Length   156 a.a.
NCBI ID   WP_000609600.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6836167     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1397388..1407858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQK99_RS07485 - 1397963..1398898 (-) 936 WP_000036043.1 manganese-dependent inorganic pyrophosphatase -
  DQK99_RS07490 - 1398969..1399268 (-) 300 WP_000349601.1 GIY-YIG nuclease family protein -
  DQK99_RS07495 - 1399258..1400007 (-) 750 WP_000390783.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DQK99_RS07500 - 1400061..1400420 (-) 360 WP_000689596.1 S1 RNA-binding domain-containing protein -
  DQK99_RS07505 - 1400422..1401822 (-) 1401 WP_000339025.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQK99_RS07510 rpsR 1402117..1402356 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  DQK99_RS07515 ssbA 1402388..1402858 (-) 471 WP_000609600.1 single-stranded DNA-binding protein SsbA Machinery gene
  DQK99_RS07520 rpsF 1402870..1403160 (-) 291 WP_001151785.1 30S ribosomal protein S6 -
  DQK99_RS07525 asnS 1403313..1404656 (-) 1344 WP_000167151.1 asparagine--tRNA ligase -
  DQK99_RS11660 - 1404675..1405040 (-) 366 WP_000565218.1 VOC family protein -
  DQK99_RS07530 - 1405033..1406220 (-) 1188 WP_000777773.1 pyridoxal phosphate-dependent aminotransferase -
  DQK99_RS07535 - 1406217..1406705 (-) 489 WP_000747253.1 DUF5590 domain-containing protein -
  DQK99_RS07545 - 1407026..1407574 (+) 549 WP_000039617.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17420.32 Da        Isoelectric Point: 5.8989

>NTDB_id=1141830 DQK99_RS07515 WP_000609600.1 1402388..1402858(-) (ssbA) [Streptococcus pneumoniae strain 4041STDY6836167]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLERRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1141830 DQK99_RS07515 WP_000609600.1 1402388..1402858(-) (ssbA) [Streptococcus pneumoniae strain 4041STDY6836167]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGACGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

53.529

100

0.583
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.731

66.667

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.427

75

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae D39

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae R6

49.573

75

0.372
  ssbB/cilA Streptococcus mitis SK321

49.573

75

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.211

69.872

0.372

Multiple sequence alignment