Detailed information NTG1141420

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: DQN42_RS01515
• Genome accession: NZ_LS483436
• Coordinates: 300133..300603 (+)
• Length: 156 a.a.
• NCBI ID: WP_003074535.1
• Uniprot ID: A0AAE8KBG2
• Organism: Streptococcus intermedius strain NCTC11324
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 295133..305603

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN42_RS01475 (NCTC11324_00298)	-	295156..295458 (+)	303	WP_003077585.1	DUF4176 domain-containing protein	-
DQN42_RS01480 (NCTC11324_00299)	-	295470..295862 (+)	393	WP_003077724.1	hypothetical protein	-
DQN42_RS01485 (NCTC11324_00300)	-	295872..296153 (+)	282	WP_003077760.1	hypothetical protein	-
DQN42_RS01490 (NCTC11324_00301)	-	296168..296467 (+)	300	WP_003077672.1	hypothetical protein	-
DQN42_RS01495 (NCTC11324_00302)	-	296490..297797 (+)	1308	WP_003077710.1	hypothetical protein	-
DQN42_RS01500 (NCTC11324_00303)	-	297807..298643 (+)	837	WP_003077839.1	hypothetical protein	-
DQN42_RS01505 (NCTC11324_00304)	-	298712..299542 (+)	831	WP_003077480.1	hypothetical protein	-
DQN42_RS01510 (NCTC11324_00305)	rpsF	299831..300121 (+)	291	WP_003077639.1	30S ribosomal protein S6	-
DQN42_RS01515 (NCTC11324_00306)	ssbA	300133..300603 (+)	471	WP_003074535.1	single-stranded DNA-binding protein	Machinery gene
DQN42_RS01520 (NCTC11324_00307)	rpsR	300640..300879 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
DQN42_RS01525 (NCTC11324_00309)	-	301288..301806 (+)	519	Protein_281	GNAT family N-acetyltransferase	-
DQN42_RS01530 (NCTC11324_00310)	-	301958..302635 (-)	678	WP_003077758.1	DUF1129 domain-containing protein	-
DQN42_RS01535 (NCTC11324_00311)	-	302651..303595 (-)	945	WP_003070861.1	magnesium transporter CorA family protein	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17465.18 Da
• Isoelectric Point: 4.9008

>NTDB_id=1141420 DQN42_RS01515 WP_003074535.1 300133..300603(+) (ssbA) [Streptococcus intermedius strain NCTC11324]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYTSNNFGSSPSANQVPNFSRDENPFGNTNPMDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=1141420 DQN42_RS01515 WP_003074535.1 300133..300603(+) (ssbA) [Streptococcus intermedius strain NCTC11324]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTTAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTTATTAACGTTGTAATTT
GGCGCCAACAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAGTTACTGGTCGCATTCAGACACGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTAGCGGATAATTTTCAGTTATTGGAAAGTCGCGC
TAGTCGTGAAGGTCAATCTTCTGGCGGCTATACTTCTAACAATTTTGGAAGTTCACCTTCTGCCAACCAAGTACCCAACT
TTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGACATCTCAGATGACGATCTACCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	59.195	100	0.66
ssb	Latilactobacillus sakei subsp. sakei 23K	56.571	100	0.635
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.547	67.949	0.391
ssbB	Streptococcus sobrinus strain NIDR 6715-7	55.046	69.872	0.385
ssbB/cilA	Streptococcus pneumoniae TIGR4	54.128	69.872	0.378
ssbB/cilA	Streptococcus mitis SK321	53.211	69.872	0.372
ssbB/cilA	Streptococcus mitis NCTC 12261	53.211	69.872	0.372
ssbB/cilA	Streptococcus pneumoniae Rx1	53.211	69.872	0.372
ssbB/cilA	Streptococcus pneumoniae D39	53.211	69.872	0.372
ssbB/cilA	Streptococcus pneumoniae R6	53.211	69.872	0.372