Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   DQN79_RS01810 Genome accession   NZ_LS483435
Coordinates   362341..363564 (-) Length   407 a.a.
NCBI ID   WP_041961549.1    Uniprot ID   A0A0B5CT05
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357341..368564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS01775 (NCTC11050_00339) - 357773..359155 (+) 1383 WP_040665512.1 Na+/H+ antiporter family protein -
  DQN79_RS01780 (NCTC11050_00340) - 359156..359374 (+) 219 WP_003769492.1 SlyX family protein -
  DQN79_RS01785 (NCTC11050_00341) rpmE 359509..359727 (+) 219 WP_081456052.1 50S ribosomal protein L31 -
  DQN79_RS01790 - 359880..360062 (-) 183 WP_234404466.1 DNA gyrase inhibitor YacG -
  DQN79_RS01795 (NCTC11050_00342) zapD 360074..360835 (-) 762 WP_003769485.1 cell division protein ZapD -
  DQN79_RS01800 coaE 360850..361452 (-) 603 WP_041961548.1 dephospho-CoA kinase -
  DQN79_RS01805 (NCTC11050_00344) pilD 361452..362333 (-) 882 WP_003769479.1 prepilin peptidase Machinery gene
  DQN79_RS01810 (NCTC11050_00345) pilG 362341..363564 (-) 1224 WP_041961549.1 type II secretion system F family protein Machinery gene
  DQN79_RS01815 (NCTC11050_00346) pilF 363589..365268 (-) 1680 WP_041961550.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DQN79_RS01820 (NCTC11050_00347) - 365403..366992 (-) 1590 WP_003769468.1 inorganic phosphate transporter -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44349.47 Da        Isoelectric Point: 9.9743

>NTDB_id=1141388 DQN79_RS01810 WP_041961549.1 362341..363564(-) (pilG) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MKINKAKNEKGYRFTFEGKHTQSEQIVRGEVVAANEDEAKKKLLRRGIKPSRVAKVKATRKKRITQEDITVFTRQLATMM
KAGLPLMQAFEIVARGHVNPSMTQLLMAVRSDVEQGSSMGAAFAKHPKYFDKFYCNLISAGEAGGVLEHLLDKLAVYKEK
TQSIKKKVKSALTYPIAIIVVAIVLVMVMMMYVLPAFGKVYADMGAELPPLTQIMMTASNFFVSYGWLVIIGLIAMTVGF
VHLVKTSPKVQKKLDALMLKVPIFGDIVRKATIARWARTTASLFAAGVPLVEALDSVAGASGNILYEEATVSIKSQVNQG
LSLTSGMQSTGLFPNMVIQMASIGEEAGSLDDMLNKAAEFYEEEVDNSVAQLSSLMEPVIMVVLGGIIGVILVAMYLPLF
NLGNVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1141388 DQN79_RS01810 WP_041961549.1 362341..363564(-) (pilG) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGAAGATAAATAAAGCAAAAAATGAAAAAGGGTATCGTTTTACTTTTGAAGGAAAGCATACACAAAGTGAACAGATTGT
ACGTGGTGAAGTAGTTGCAGCTAATGAGGATGAGGCAAAGAAAAAATTATTACGTCGAGGTATTAAACCTTCTCGTGTTG
CTAAAGTGAAGGCAACACGTAAGAAACGTATCACCCAGGAAGATATTACTGTGTTTACACGTCAACTTGCTACAATGATG
AAGGCTGGATTACCTTTAATGCAGGCTTTTGAGATTGTTGCCAGAGGGCATGTGAATCCTTCAATGACTCAATTATTAAT
GGCAGTGCGTAGTGATGTAGAGCAAGGTAGCTCTATGGGGGCTGCGTTTGCTAAGCATCCGAAATATTTTGATAAGTTTT
ACTGTAATCTAATTTCTGCTGGTGAGGCTGGTGGTGTACTAGAGCATTTGTTGGATAAGTTAGCAGTATATAAAGAAAAA
ACTCAATCAATTAAGAAGAAAGTTAAATCAGCTCTAACTTATCCAATAGCAATTATTGTGGTTGCTATTGTATTGGTCAT
GGTGATGATGATGTATGTATTACCAGCATTTGGTAAGGTGTATGCAGATATGGGGGCGGAGTTGCCACCATTAACCCAAA
TAATGATGACTGCCTCGAATTTTTTTGTTAGTTATGGGTGGTTGGTAATTATTGGATTAATTGCTATGACCGTGGGTTTT
GTTCATTTGGTAAAAACTTCACCTAAAGTTCAGAAGAAATTAGATGCTTTGATGCTGAAGGTTCCTATTTTTGGTGATAT
TGTACGCAAGGCTACAATTGCCCGTTGGGCGCGTACTACAGCTAGTTTGTTTGCTGCAGGTGTTCCTTTGGTAGAAGCAT
TAGATTCAGTGGCAGGGGCATCAGGTAATATTCTTTATGAGGAAGCCACAGTTTCGATTAAATCACAAGTGAATCAAGGT
TTATCTTTAACATCTGGTATGCAGAGCACCGGTTTATTTCCTAATATGGTTATACAAATGGCTTCGATTGGTGAGGAAGC
TGGGTCACTGGATGATATGCTGAATAAAGCTGCTGAGTTTTATGAAGAAGAGGTCGATAATTCTGTCGCACAATTATCTT
CATTAATGGAACCAGTAATTATGGTAGTTCTGGGAGGTATCATTGGCGTTATTTTGGTTGCGATGTATCTGCCGCTGTTT
AATTTAGGCAATGTAGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5CT05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

68.579

98.526

0.676
  pilG Neisseria meningitidis 44/76-A

67.581

98.526

0.666
  pilC Legionella pneumophila strain ERS1305867

46.734

97.789

0.457
  pilC Acinetobacter baumannii D1279779

45.98

97.789

0.45
  pilC Pseudomonas stutzeri DSM 10701

45.96

97.297

0.447
  pilC Acinetobacter baylyi ADP1

44.975

97.789

0.44
  pilC Vibrio cholerae strain A1552

37.226

100

0.376
  pilC Vibrio campbellii strain DS40M4

36.675

100

0.369

Multiple sequence alignment