Detailed information NTG1141387

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DQN79_RS01805
• Genome accession: NZ_LS483435
• Coordinates: 361452..362333 (-)
• Length: 293 a.a.
• NCBI ID: WP_003769479.1
• Uniprot ID: -
• Organism: Neisseria elongata subsp. glycolytica strain NCTC11050
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 356452..367333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN79_RS01770 (NCTC11050_00338)	-	356506..357480 (+)	975	WP_227717132.1	hypothetical protein	-
DQN79_RS01775 (NCTC11050_00339)	-	357773..359155 (+)	1383	WP_040665512.1	Na+/H+ antiporter family protein	-
DQN79_RS01780 (NCTC11050_00340)	-	359156..359374 (+)	219	WP_003769492.1	SlyX family protein	-
DQN79_RS01785 (NCTC11050_00341)	rpmE	359509..359727 (+)	219	WP_081456052.1	50S ribosomal protein L31	-
DQN79_RS01790	-	359880..360062 (-)	183	WP_234404466.1	DNA gyrase inhibitor YacG	-
DQN79_RS01795 (NCTC11050_00342)	zapD	360074..360835 (-)	762	WP_003769485.1	cell division protein ZapD	-
DQN79_RS01800	coaE	360850..361452 (-)	603	WP_041961548.1	dephospho-CoA kinase	-
DQN79_RS01805 (NCTC11050_00344)	pilD	361452..362333 (-)	882	WP_003769479.1	prepilin peptidase	Machinery gene
DQN79_RS01810 (NCTC11050_00345)	pilG	362341..363564 (-)	1224	WP_041961549.1	type II secretion system F family protein	Machinery gene
DQN79_RS01815 (NCTC11050_00346)	pilF	363589..365268 (-)	1680	WP_041961550.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DQN79_RS01820 (NCTC11050_00347)	-	365403..366992 (-)	1590	WP_003769468.1	inorganic phosphate transporter	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32185.22 Da
• Isoelectric Point: 7.9692

>NTDB_id=1141387 DQN79_RS01805 WP_003769479.1 361452..362333(-) (pilD) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MNDLYSWINEAYAPWTVQLAVVFGLLVGSFLNVVIYRIPVMMEREWTVFAKTHLDIALTNEEKEPFSLTKPASRCPKCGS
SVKPWQNIPVLSYILLKGQCHKCHVHISLRYPLIEILTACVFGIVAVCYGWSWITLTGFIFSAILIVLTFIDADTQYLPD
ELTNPLIWLGLLTNSTGNGLVDLKQSLLGAVFGYLSLWLLNKIHKTIRGIDGIGGGDFKLLAALGAWLGSLVLPIIVLVA
AIIGILAAVVMKVAKSQPIAFGPSLAIAGWVVFIAYDKVIAGVNWWLHQSGFA

Nucleotide

• Length: 882 bp

>NTDB_id=1141387 DQN79_RS01805 WP_003769479.1 361452..362333(-) (pilD) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGAATGATCTTTATTCATGGATAAATGAAGCTTATGCTCCTTGGACTGTTCAGTTGGCTGTTGTCTTTGGTTTATTAGT
TGGCAGTTTTTTAAATGTAGTGATCTATCGTATTCCTGTTATGATGGAACGTGAATGGACTGTTTTCGCAAAGACACATC
TAGATATTGCTTTAACTAATGAAGAAAAAGAGCCATTTAGCTTAACTAAACCGGCATCACGATGTCCAAAATGTGGAAGT
TCCGTAAAGCCTTGGCAAAATATACCTGTGCTGAGTTATATTTTATTGAAGGGTCAATGTCATAAGTGTCACGTCCATAT
CAGTTTGCGGTATCCATTGATTGAAATCTTGACTGCTTGTGTATTCGGCATTGTTGCAGTCTGTTATGGATGGTCTTGGA
TTACTTTAACGGGTTTTATATTTTCCGCAATTTTGATAGTGTTGACATTCATTGATGCGGATACTCAATATTTACCTGAT
GAACTTACTAATCCTTTAATTTGGTTGGGATTGTTGACTAATTCTACAGGGAATGGATTGGTGGATTTGAAACAATCCCT
TTTAGGAGCCGTATTTGGATATTTAAGTTTATGGTTGTTGAATAAAATACATAAAACGATTCGCGGTATAGATGGAATCG
GTGGTGGGGATTTTAAATTGTTAGCAGCTTTAGGGGCTTGGTTGGGTAGTTTGGTATTGCCTATAATAGTCCTTGTTGCG
GCAATAATCGGCATCCTGGCTGCCGTAGTTATGAAAGTTGCGAAGAGTCAGCCTATCGCATTCGGTCCCAGCTTAGCTAT
TGCTGGATGGGTAGTGTTTATTGCCTATGATAAAGTGATTGCTGGGGTGAATTGGTGGTTGCACCAGTCAGGGTTTGCAT
AG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	58.478	98.635	0.577
pilD	Vibrio campbellii strain DS40M4	44.484	95.904	0.427
pilD	Vibrio cholerae strain A1552	44.727	93.857	0.42
pilD	Acinetobacter baumannii D1279779	42.908	96.246	0.413
pilD	Acinetobacter nosocomialis M2	42.553	96.246	0.41