Detailed information NTG1140879

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: DQN54_RS07525
• Genome accession: NZ_LS483417
• Coordinates: 1418452..1418922 (-)
• Length: 156 a.a.
• NCBI ID: WP_000609607.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain NCTC11902
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1413452..1423922

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN54_RS07495 (NCTC11902_01440)	-	1414027..1414962 (-)	936	WP_000036044.1	manganese-dependent inorganic pyrophosphatase	-
DQN54_RS07500 (NCTC11902_01441)	-	1415033..1415332 (-)	300	WP_000349602.1	GIY-YIG nuclease family protein	-
DQN54_RS07505 (NCTC11902_01442)	-	1415322..1416071 (-)	750	WP_000390783.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
DQN54_RS07510 (NCTC11902_01443)	-	1416125..1416484 (-)	360	WP_000689596.1	S1 RNA-binding domain-containing protein	-
DQN54_RS07515 (NCTC11902_01444)	-	1416486..1417886 (-)	1401	WP_000339019.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
DQN54_RS07520 (NCTC11902_01445)	rpsR	1418181..1418420 (-)	240	WP_000068664.1	30S ribosomal protein S18	-
DQN54_RS07525 (NCTC11902_01446)	ssbA	1418452..1418922 (-)	471	WP_000609607.1	single-stranded DNA-binding protein SsbA	Machinery gene
DQN54_RS07530 (NCTC11902_01447)	rpsF	1418934..1419224 (-)	291	WP_001151785.1	30S ribosomal protein S6	-
DQN54_RS07535 (NCTC11902_01448)	asnS	1419377..1420720 (-)	1344	WP_000167151.1	asparagine--tRNA ligase	-
DQN54_RS11285 (NCTC11902_01449)	-	1420739..1421104 (-)	366	WP_000565218.1	VOC family protein	-
DQN54_RS07540 (NCTC11902_01450)	-	1421097..1422284 (-)	1188	WP_000777779.1	pyridoxal phosphate-dependent aminotransferase	-
DQN54_RS07545 (NCTC11902_01451)	-	1422281..1422769 (-)	489	WP_000747261.1	DUF5590 domain-containing protein	-
DQN54_RS07555 (NCTC11902_01452)	-	1423090..1423638 (+)	549	WP_000039618.1	NADPH-dependent FMN reductase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17351.21 Da
• Isoelectric Point: 5.2065

>NTDB_id=1140879 DQN54_RS07525 WP_000609607.1 1418452..1418922(-) (ssbA) [Streptococcus pneumoniae strain NCTC11902]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=1140879 DQN54_RS07525 WP_000609607.1 1418452..1418922(-) (ssbA) [Streptococcus pneumoniae strain NCTC11902]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAATTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.814	100	0.615
ssb	Latilactobacillus sakei subsp. sakei 23K	54.118	100	0.59
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.66	67.949	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssbB/cilA	Streptococcus pneumoniae TIGR4	53.211	69.872	0.372
ssbB/cilA	Streptococcus mitis SK321	52.294	69.872	0.365
ssbB/cilA	Streptococcus mitis NCTC 12261	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae Rx1	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae D39	52.294	69.872	0.365
ssbB/cilA	Streptococcus pneumoniae R6	52.294	69.872	0.365