Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DQN24_RS03300 | Genome accession | NZ_LS483411 |
| Coordinates | 655326..655775 (-) | Length | 149 a.a. |
| NCBI ID | WP_021035703.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain NCTC11426 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 650326..660775
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN24_RS03280 (NCTC11426_00649) | rho | 650713..651975 (+) | 1263 | WP_005648966.1 | transcription termination factor Rho | - |
| DQN24_RS03285 (NCTC11426_00650) | pilD | 652029..652721 (-) | 693 | WP_041175383.1 | prepilin peptidase | Machinery gene |
| DQN24_RS03290 (NCTC11426_00651) | pilC | 652718..653938 (-) | 1221 | WP_021035705.1 | type II secretion system F family protein | Machinery gene |
| DQN24_RS03295 (NCTC11426_00652) | pilB | 653935..655329 (-) | 1395 | WP_111695393.1 | GspE/PulE family protein | Machinery gene |
| DQN24_RS03300 (NCTC11426_00653) | pilA | 655326..655775 (-) | 450 | WP_021035703.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| DQN24_RS03305 (NCTC11426_00654) | ampD | 655890..656444 (+) | 555 | WP_021035702.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| DQN24_RS03310 (NCTC11426_00655) | corC | 657076..657975 (+) | 900 | WP_021035700.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| DQN24_RS03315 (NCTC11426_00656) | lnt | 657998..659527 (+) | 1530 | WP_111695739.1 | apolipoprotein N-acyltransferase | - |
| DQN24_RS03320 (NCTC11426_00657) | rsmE | 659577..660314 (+) | 738 | WP_111695394.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15478.84 Da Isoelectric Point: 8.4623
>NTDB_id=1140665 DQN24_RS03300 WP_021035703.1 655326..655775(-) (pilA) [Haemophilus influenzae strain NCTC11426]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTSCTGGKNGIA
ADIKTAKGYVASVITQSGGITVKGNGTLANIEYILQATGNAAAGVTWTTTCKGTDASLFPANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTSCTGGKNGIA
ADIKTAKGYVASVITQSGGITVKGNGTLANIEYILQATGNAAAGVTWTTTCKGTDASLFPANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=1140665 DQN24_RS03300 WP_021035703.1 655326..655775(-) (pilA) [Haemophilus influenzae strain NCTC11426]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGTTTTACATTAATCGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACCATCGCAATTCCTTCTTATCAAAATTATACCAAAAAAGCTGCGGTATCCGAATTACTGCAAGCGTCTGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAGCTGTACAGGGGGAAAAAATGGTATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAGCCTCAGTTATCACTCAATCAGGTGGCATTACAGTAAAAGGGAATGGCAC
ATTGGCAAATATAGAATATATTTTGCAAGCTACAGGTAATGCTGCAGCAGGTGTAACTTGGACAACAACCTGCAAAGGAA
CGGATGCCTCTTTATTTCCTGCAAATTTTTGCGGAAGTGTCACACAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGTTTTACATTAATCGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACCATCGCAATTCCTTCTTATCAAAATTATACCAAAAAAGCTGCGGTATCCGAATTACTGCAAGCGTCTGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAGCTGTACAGGGGGAAAAAATGGTATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAGCCTCAGTTATCACTCAATCAGGTGGCATTACAGTAAAAGGGAATGGCAC
ATTGGCAAATATAGAATATATTTTGCAAGCTACAGGTAATGCTGCAGCAGGTGTAACTTGGACAACAACCTGCAAAGGAA
CGGATGCCTCTTTATTTCCTGCAAATTTTTGCGGAAGTGTCACACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae Rd KW20 |
97.315 |
100 |
0.973 |
| pilA | Haemophilus influenzae 86-028NP |
93.289 |
100 |
0.933 |
| pilA | Glaesserella parasuis strain SC1401 |
54.362 |
100 |
0.544 |
| pilA2 | Legionella pneumophila str. Paris |
41.727 |
93.289 |
0.389 |
| pilA | Vibrio campbellii strain DS40M4 |
40.426 |
94.631 |
0.383 |