Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DQM45_RS00775 | Genome accession | NZ_LS483388 |
| Coordinates | 118608..119003 (+) | Length | 131 a.a. |
| NCBI ID | WP_003082593.1 | Uniprot ID | - |
| Organism | Streptococcus porcinus strain NCTC10999 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 113608..124003
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM45_RS00735 (NCTC10999_00152) | - | 113612..113821 (+) | 210 | WP_003083613.1 | helix-turn-helix transcriptional regulator | - |
| DQM45_RS00740 (NCTC10999_00153) | - | 113818..114270 (+) | 453 | WP_039984742.1 | hypothetical protein | - |
| DQM45_RS00745 (NCTC10999_00154) | - | 114280..114921 (+) | 642 | WP_003084336.1 | CPBP family intramembrane glutamic endopeptidase | - |
| DQM45_RS00750 (NCTC10999_00155) | proC | 114971..115741 (-) | 771 | WP_003085990.1 | pyrroline-5-carboxylate reductase | - |
| DQM45_RS00755 (NCTC10999_00156) | pepA | 115759..116826 (-) | 1068 | WP_003083897.1 | glutamyl aminopeptidase | - |
| DQM45_RS00760 (NCTC10999_00157) | - | 117022..117309 (+) | 288 | WP_003084445.1 | DUF4651 domain-containing protein | - |
| DQM45_RS00765 (NCTC10999_00158) | - | 117302..117619 (+) | 318 | WP_003082874.1 | thioredoxin family protein | - |
| DQM45_RS00770 (NCTC10999_00159) | ytpR | 117637..118263 (+) | 627 | WP_003085847.1 | YtpR family tRNA-binding protein | - |
| DQM45_RS00775 (NCTC10999_00161) | ssbA | 118608..119003 (+) | 396 | WP_003082593.1 | single-stranded DNA-binding protein | Machinery gene |
| DQM45_RS00780 (NCTC10999_00162) | - | 119475..120431 (+) | 957 | WP_003084013.1 | ABC transporter substrate-binding protein | - |
| DQM45_RS00785 (NCTC10999_00163) | - | 120447..121409 (+) | 963 | WP_003085535.1 | ABC transporter substrate-binding protein | - |
| DQM45_RS00790 (NCTC10999_00164) | - | 121427..122311 (+) | 885 | WP_003083454.1 | ABC transporter permease | - |
| DQM45_RS00795 (NCTC10999_00165) | - | 122320..123123 (+) | 804 | WP_003083252.1 | ABC transporter ATP-binding protein | - |
| DQM45_RS00800 (NCTC10999_00166) | - | 123212..123853 (-) | 642 | WP_003085179.1 | deoxynucleoside kinase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15050.38 Da Isoelectric Point: 7.7422
>NTDB_id=1139781 DQM45_RS00775 WP_003082593.1 118608..119003(+) (ssbA) [Streptococcus porcinus strain NCTC10999]
MYNKVIMIGRLVNHPDLIKTPKDKHVCRVSIAVNRRFKNAEGERQVDFVNLVLWGRLAESMASYGSKGSLISLDGELRIR
KYEKDGKMTYMTEVLCQSYQLLESRAQRAVRENNLADDLCDLVLDEEALPF
MYNKVIMIGRLVNHPDLIKTPKDKHVCRVSIAVNRRFKNAEGERQVDFVNLVLWGRLAESMASYGSKGSLISLDGELRIR
KYEKDGKMTYMTEVLCQSYQLLESRAQRAVRENNLADDLCDLVLDEEALPF
Nucleotide
Download Length: 396 bp
>NTDB_id=1139781 DQM45_RS00775 WP_003082593.1 118608..119003(+) (ssbA) [Streptococcus porcinus strain NCTC10999]
ATGTATAATAAAGTAATCATGATTGGTCGATTAGTTAACCATCCCGACTTGATAAAGACCCCAAAAGATAAGCATGTGTG
CCGAGTTTCAATTGCTGTCAATCGCCGTTTTAAAAATGCTGAAGGTGAGCGTCAAGTTGATTTTGTTAATCTTGTTCTTT
GGGGACGATTGGCTGAAAGCATGGCTTCGTATGGTAGCAAAGGTAGCTTGATTTCGCTTGATGGCGAGCTACGCATCCGT
AAGTACGAAAAAGATGGTAAGATGACTTATATGACCGAAGTCCTATGCCAATCTTATCAACTTTTAGAGAGCCGCGCTCA
GCGGGCTGTTAGAGAAAATAACCTGGCTGATGATCTTTGTGATTTGGTTTTAGATGAAGAGGCCTTACCTTTCTAA
ATGTATAATAAAGTAATCATGATTGGTCGATTAGTTAACCATCCCGACTTGATAAAGACCCCAAAAGATAAGCATGTGTG
CCGAGTTTCAATTGCTGTCAATCGCCGTTTTAAAAATGCTGAAGGTGAGCGTCAAGTTGATTTTGTTAATCTTGTTCTTT
GGGGACGATTGGCTGAAAGCATGGCTTCGTATGGTAGCAAAGGTAGCTTGATTTCGCTTGATGGCGAGCTACGCATCCGT
AAGTACGAAAAAGATGGTAAGATGACTTATATGACCGAAGTCCTATGCCAATCTTATCAACTTTTAGAGAGCCGCGCTCA
GCGGGCTGTTAGAGAAAATAACCTGGCTGATGATCTTTGTGATTTGGTTTTAGATGAAGAGGCCTTACCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
74.046 |
100 |
0.74 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
68.702 |
100 |
0.687 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
68.702 |
100 |
0.687 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
68.702 |
100 |
0.687 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
68.702 |
100 |
0.687 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
67.939 |
100 |
0.679 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
67.176 |
100 |
0.672 |
| ssbB/cilA | Streptococcus mitis SK321 |
67.176 |
100 |
0.672 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
53.571 |
85.496 |
0.458 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
42.735 |
89.313 |
0.382 |