Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   DQM67_RS10240 Genome accession   NZ_LS483383
Coordinates   1998137..1999315 (+) Length   392 a.a.
NCBI ID   WP_005591380.1    Uniprot ID   A0AAV3EGJ2
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1993137..2004315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS10200 (NCTC12479_01977) sdaAB 1993906..1994577 (-) 672 WP_005592070.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  DQM67_RS10215 (NCTC12479_01980) comE/comE2 1994923..1995666 (-) 744 WP_005591384.1 competence system response regulator transcription factor ComE Regulator
  DQM67_RS10220 (NCTC12479_01981) comD/comD1 1995663..1997009 (-) 1347 WP_376738740.1 sensor histidine kinase Regulator
  DQM67_RS10225 (NCTC12479_01982) comC 1997032..1997160 (-) 129 WP_005591382.1 bacteriocin Regulator
  DQM67_RS10235 (NCTC12479_01984) rlmH 1997455..1997934 (-) 480 WP_005591381.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQM67_RS10240 (NCTC12479_01985) htrA 1998137..1999315 (+) 1179 WP_005591380.1 S1C family serine protease Regulator
  DQM67_RS10245 (NCTC12479_01986) spo0J 1999378..2000139 (+) 762 WP_005591379.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 392 a.a.        Molecular weight: 41362.51 Da        Isoelectric Point: 5.8365

>NTDB_id=1139544 DQM67_RS10240 WP_005591380.1 1998137..1999315(+) (htrA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MKNASNFFKKSLLLFIVLVVGFIGGSLGNLTTAFLNNKMANIGPSSSKTTVSTSYKNTTDTTKAVKKVQNAVVSVITYTG
SNQEGVINNESTSDPQVASEGSGVIYKKEGKYAYLVTNTHVLNGAKNPDILLADGNKVPGEVVGSDVYSDISVVRISSEK
VKDVAEFGDSNSLTVGETAIAIGSPLGTEYANSVTQGIISSLGRNVTLQSEDGQNISTTALQTDAAINPGNSGGPLINIQ
GQVIGITSSKISHNGQTAVEGMGFAIPSNDVVNIIKQLEKTGTVTRPALGIQMLDLSNIATSDLAKLRLPSSVKSGILVR
SVQEGMPAENKLQKYDVITKVDDKDVESTSDLQSALYRHSLGDDLKVTYFRDGKEATTTIKLTKSTQDLSDN

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1139544 DQM67_RS10240 WP_005591380.1 1998137..1999315(+) (htrA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGAAAAACGCTTCAAATTTCTTTAAAAAATCTTTGTTGCTTTTTATCGTTTTAGTTGTAGGATTTATTGGCGGAAGCCT
AGGAAATTTAACCACTGCATTTCTTAATAATAAAATGGCTAATATTGGTCCTTCTAGCTCAAAGACCACTGTATCAACGT
CTTATAAAAACACAACCGATACCACAAAGGCTGTAAAAAAGGTTCAAAACGCAGTTGTATCAGTGATTACTTATACAGGT
TCTAATCAAGAAGGAGTGATCAATAATGAATCAACCAGTGATCCTCAAGTAGCTAGTGAGGGATCTGGTGTTATTTATAA
GAAGGAAGGAAAATATGCCTACCTTGTTACCAATACTCACGTTCTAAATGGAGCAAAAAATCCCGATATTCTACTAGCAG
ATGGTAATAAGGTTCCTGGTGAAGTGGTAGGATCAGATGTTTATTCTGATATTTCTGTAGTAAGAATTAGCTCTGAAAAG
GTGAAAGATGTAGCTGAATTTGGAGATTCCAACTCCCTGACAGTAGGAGAAACTGCTATTGCCATCGGAAGCCCTCTCGG
AACAGAATACGCTAACTCTGTTACACAAGGAATCATCTCTAGTTTAGGCAGAAATGTAACTCTCCAATCTGAAGACGGCC
AAAATATTTCCACGACTGCCTTGCAAACAGATGCTGCTATCAACCCTGGTAACTCTGGTGGCCCACTCATCAATATCCAA
GGGCAAGTTATCGGTATTACGTCCAGCAAAATCTCTCACAATGGTCAAACTGCTGTAGAAGGCATGGGCTTTGCAATCCC
ATCAAACGATGTTGTCAACATTATCAAGCAATTAGAAAAAACTGGAACAGTAACTCGTCCTGCTCTGGGTATCCAAATGC
TCGATTTATCTAATATCGCCACTTCTGACTTAGCAAAATTACGTCTGCCTTCATCTGTAAAATCAGGTATCCTTGTCCGC
TCTGTGCAAGAAGGAATGCCTGCTGAAAATAAACTTCAGAAATACGATGTCATCACAAAAGTTGACGATAAGGATGTTGA
GTCAACCAGTGATTTACAATCTGCTCTCTACAGACATTCTCTGGGAGATGACTTGAAAGTGACTTACTTTAGGGATGGTA
AAGAGGCTACTACAACAATTAAATTGACCAAATCAACCCAGGACTTAAGTGACAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

67.848

100

0.684

  htrA Streptococcus pneumoniae Rx1

64.194

99.745

0.64

  htrA Streptococcus pneumoniae D39

64.194

99.745

0.64

  htrA Streptococcus pneumoniae R6

64.194

99.745

0.64

  htrA Streptococcus pneumoniae TIGR4

64.194

99.745

0.64

  htrA Streptococcus mitis NCTC 12261

64.194

99.745

0.64

  htrA Streptococcus mutans UA159

54.839

100

0.564


Multiple sequence alignment