Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   DQM54_RS07795 Genome accession   NZ_LS483375
Coordinates   1577284..1577949 (-) Length   221 a.a.
NCBI ID   WP_111723982.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1572284..1582949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS07780 (NCTC3165_01550) - 1573254..1573859 (-) 606 WP_045773124.1 superoxide dismutase -
  DQM54_RS07785 (NCTC3165_01551) holA 1573932..1574969 (-) 1038 WP_111723980.1 DNA polymerase III subunit delta -
  DQM54_RS07790 (NCTC3165_01552) comEC/celB 1575060..1577300 (-) 2241 WP_111723981.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQM54_RS07795 (NCTC3165_01553) comEA/celA/cilE 1577284..1577949 (-) 666 WP_111723982.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQM54_RS07800 (NCTC3165_01554) - 1578046..1578573 (-) 528 WP_111723983.1 HXXEE domain-containing protein -
  DQM54_RS07805 (NCTC3165_01555) - 1578612..1579352 (-) 741 WP_041789898.1 lysophospholipid acyltransferase family protein -
  DQM54_RS07810 (NCTC3165_01556) - 1579482..1581851 (+) 2370 WP_111723984.1 cation-translocating P-type ATPase -
  DQM54_RS07815 (NCTC3165_01557) - 1581956..1582702 (+) 747 WP_111723985.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23458.20 Da        Isoelectric Point: 4.8255

>NTDB_id=1139126 DQM54_RS07795 WP_111723982.1 1577284..1577949(-) (comEA/celA/cilE) [Streptococcus gordonii strain NCTC3165]
MIEDLIEKAKQYKIALGLGLLGVIAAGFILLQGRDQGGTDVQQLTEQTSSSSSYKDEKSNKSNEISQTETGDQLVTVDVK
GAVKKPGVYQLQSNSRVHDALEKAGGMTEEADLKSVNQAQKLSDEAVVYVAKVGENAVDVTTSAPANATSGTGQTKSALV
NLNTATEADFQTISGIGQKRAQDIIAYREANGKFKSVDDLKNVSGIGAKTLEKLKEYVTVD

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1139126 DQM54_RS07795 WP_111723982.1 1577284..1577949(-) (comEA/celA/cilE) [Streptococcus gordonii strain NCTC3165]
ATGATAGAAGATTTGATAGAAAAAGCAAAGCAATATAAAATTGCTCTAGGTCTTGGTCTATTAGGAGTGATTGCAGCAGG
CTTTATTTTACTACAGGGAAGAGACCAAGGAGGGACAGATGTTCAGCAGTTGACAGAGCAAACTTCTTCCTCTAGCTCAT
ATAAGGATGAAAAAAGTAACAAGAGCAATGAGATCAGTCAAACCGAGACAGGAGATCAGTTGGTTACAGTTGATGTCAAG
GGTGCGGTAAAAAAGCCTGGTGTCTATCAGTTGCAGTCTAATAGTCGGGTTCATGATGCTTTAGAGAAGGCAGGTGGCAT
GACGGAAGAAGCTGACTTAAAATCTGTCAATCAGGCTCAGAAACTGAGCGATGAGGCGGTAGTATATGTAGCCAAGGTCG
GAGAAAATGCTGTAGATGTTACGACGAGTGCCCCTGCAAATGCAACATCAGGAACAGGTCAGACAAAATCAGCACTGGTC
AATCTTAATACAGCAACAGAAGCAGACTTTCAAACTATTTCTGGTATCGGGCAAAAACGAGCACAGGATATTATTGCTTA
TCGAGAAGCCAATGGCAAATTTAAGTCTGTAGATGATCTGAAAAATGTATCAGGTATTGGGGCCAAAACTCTAGAAAAAT
TAAAAGAATATGTCACAGTGGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(158-219)

SLBB domain (SLBB)

(77-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

51.57

100

0.52
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.351

100

0.516
  comEA/celA/cilE Streptococcus pneumoniae Rx1

51.351

100

0.516
  comEA/celA/cilE Streptococcus pneumoniae D39

51.351

100

0.516
  comEA/celA/cilE Streptococcus pneumoniae R6

51.351

100

0.516
  comEA/celA/cilE Streptococcus mitis SK321

49.099

100

0.493
  comEA Latilactobacillus sakei subsp. sakei 23K

35.685

100

0.389
  comEA Streptococcus thermophilus LMD-9

58.108

66.968

0.389
  comEA Bacillus subtilis subsp. subtilis str. 168

38.318

96.833

0.371

Multiple sequence alignment