Detailed information NTG1138817

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: DQM52_RS00790
• Genome accession: NZ_LS483367
• Coordinates: 130219..130545 (+)
• Length: 108 a.a.
• NCBI ID: WP_003055259.1
• Uniprot ID: A0A9X8T184
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 125219..135545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM52_RS00775 (NCTC5371_00160)	-	127863..128228 (+)	366	WP_003055257.1	DUF1033 family protein	-
DQM52_RS00780 (NCTC5371_00161)	comGA/cglA	128309..129250 (+)	942	WP_003062163.1	competence type IV pilus ATPase ComGA	Machinery gene
DQM52_RS00785 (NCTC5371_00162)	comYB	129186..130217 (+)	1032	WP_015057201.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQM52_RS00790 (NCTC5371_00163)	comYC	130219..130545 (+)	327	WP_003055259.1	competence type IV pilus major pilin ComGC	Machinery gene
DQM52_RS00795 (NCTC5371_00164)	comGD	130520..130948 (+)	429	WP_014611932.1	competence type IV pilus minor pilin ComGD	-
DQM52_RS00800 (NCTC5371_00165)	comGE	130956..131201 (+)	246	WP_003058569.1	competence type IV pilus minor pilin ComGE	-
DQM52_RS00805 (NCTC5371_00166)	comGF	131182..131622 (+)	441	WP_003061780.1	competence type IV pilus minor pilin ComGF	-
DQM52_RS00810 (NCTC5371_00167)	comGG	131645..131974 (+)	330	WP_003058539.1	competence type IV pilus minor pilin ComGG	-
DQM52_RS00815 (NCTC5371_00168)	comYH	132037..132990 (+)	954	WP_003060701.1	class I SAM-dependent methyltransferase	Machinery gene
DQM52_RS00820 (NCTC5371_00169)	-	133049..134245 (+)	1197	WP_110407814.1	acetate kinase	-
DQM52_RS00825 (NCTC5371_00170)	-	134551..134757 (+)	207	WP_003058508.1	helix-turn-helix transcriptional regulator	-
DQM52_RS00830 (NCTC5371_00171)	-	134860..135540 (+)	681	WP_003060329.1	type II CAAX endopeptidase family protein	-

Sequence

Protein

• Length: 108 a.a.
• Molecular weight: 12384.38 Da
• Isoelectric Point: 9.6412

>NTDB_id=1138817 DQM52_RS00790 WP_003055259.1 130219..130545(+) (comYC) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
MKNQWKPLRQYQLQAFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLSQLKT
DGSITDKQVKAYTDYYGKHRDETQKLQP

Nucleotide

• Length: 327 bp

>NTDB_id=1138817 DQM52_RS00790 WP_003055259.1 130219..130545(+) (comYC) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
ATGAAAAACCAATGGAAACCATTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTACTGGTAATTTTAGT
CATCAGTGTCTTAATGCTCTTATTTGTACCTAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTACGAATTATCGCAAGGATCAAAACCAAGTTTAAGTCAATTAAAGACT
GATGGCAGTATTACAGATAAGCAGGTAAAAGCTTACACAGACTATTATGGAAAACACAGAGATGAGACTCAAAAACTGCA
ACCTTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus gordonii str. Challis substr. CH1	60.194	95.37	0.574
comGC/cglC	Streptococcus mitis SK321	53.774	98.148	0.528
comGC	Lactococcus lactis subsp. cremoris KW2	54.369	95.37	0.519
comGC/cglC	Streptococcus mitis NCTC 12261	55.556	91.667	0.509
comGC/cglC	Streptococcus pneumoniae Rx1	51.887	98.148	0.509
comGC/cglC	Streptococcus pneumoniae D39	51.887	98.148	0.509
comGC/cglC	Streptococcus pneumoniae R6	51.887	98.148	0.509
comGC/cglC	Streptococcus pneumoniae TIGR4	51.402	99.074	0.509
comYC	Streptococcus mutans UA140	53.465	93.519	0.5
comYC	Streptococcus mutans UA159	53.465	93.519	0.5
comYC	Streptococcus suis isolate S10	50.562	82.407	0.417