Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQM55_RS02285 Genome accession   NZ_LS483364
Coordinates   443227..445203 (+) Length   658 a.a.
NCBI ID   WP_111675347.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11086     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 438227..450203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS02270 (NCTC11086_00450) amiA 438876..440831 (+) 1956 WP_032912388.1 peptide ABC transporter substrate-binding protein Regulator
  DQM55_RS02275 (NCTC11086_00451) amiA3 441024..442994 (+) 1971 WP_111675346.1 peptide ABC transporter substrate-binding protein Regulator
  DQM55_RS02285 (NCTC11086_00452) amiA3 443227..445203 (+) 1977 WP_111675347.1 peptide ABC transporter substrate-binding protein Regulator
  DQM55_RS02290 (NCTC11086_00453) amiC 445268..446764 (+) 1497 WP_002902452.1 ABC transporter permease Regulator
  DQM55_RS02295 (NCTC11086_00454) amiD 446764..447690 (+) 927 WP_002920135.1 oligopeptide ABC transporter permease OppC Regulator
  DQM55_RS02300 (NCTC11086_00455) amiE 447699..448766 (+) 1068 WP_002902455.1 ABC transporter ATP-binding protein Regulator
  DQM55_RS02305 (NCTC11086_00456) amiF 448777..449703 (+) 927 WP_002922228.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 73143.14 Da        Isoelectric Point: 4.6314

>NTDB_id=1138652 DQM55_RS02285 WP_111675347.1 443227..445203(+) (amiA3) [Streptococcus sanguinis strain NCTC11086]
MKQSKVLALAGVTLLAAGFLAACSGSKPNTKSGSSNTFNYIYETDPENLNYLTSSKAATTDLTANVIDGLLENDQYGNLV
PSMAEEWTVSPDGKTYTYKLRKDAKWYTSEGEEYADVTAEDFVTGLKYAADNKSETIYLVQDSVKGLKDYISGKIDFSEV
GIKAVDDHTVEYTLNEPESFWNSKTTMGILYPVNKDFLENQGDKFAQATDPTSLLYNGPFLLKSLTSKSEIQFEKNPNYW
DKENVHVDAVKLSFYDGQDQGKPAEQFSQGALTTARLFPTSATYEKVEKDFKDNIVYTPQDASTFLVGTNIDRQSYNHTA
KTSEVQKTSTKKALLNKDFRQALTFAFNRESYASQINGKDGADKLLRNLYIPPTFVQAGDKSFGDLVKEKVVTYGDEWKD
VDFSDGQDGLYNENKAKAEFAKAKEALKADGVEFPIHLDIPVDQTATSKVQRVQSLKQSIEKTLGTDNVVIDVHQLSKDE
VTNITLFAPSAAEEDWDISDNVGWSPDYQDPSTYLDVIKPGGENTKTFLGFDGTDNAAAKQVGLDEYTKLVDEAGAEKQD
LNKRYEKYAAAQAWLTDSALLIPVTSRTGRPTLTKVVPFSAPFAWSGAKAREAASYKYMKLQDEPVTTKDYNSAQEKWNK
ERAESNKKAQEELADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1138652 DQM55_RS02285 WP_111675347.1 443227..445203(+) (amiA3) [Streptococcus sanguinis strain NCTC11086]
ATGAAACAAAGCAAAGTCCTTGCGTTAGCAGGAGTAACTCTTCTTGCGGCTGGCTTTCTTGCAGCTTGCTCAGGCTCTAA
GCCAAACACAAAATCAGGCAGTTCTAACACCTTTAATTATATCTACGAGACAGATCCTGAAAACTTGAACTATCTCACTT
CAAGTAAAGCTGCTACAACAGACTTGACAGCAAATGTCATTGACGGTCTTTTAGAAAACGACCAATATGGAAACTTAGTT
CCTTCAATGGCAGAGGAATGGACTGTATCACCAGATGGGAAGACCTATACATACAAGCTTCGCAAAGATGCTAAGTGGTA
TACTTCTGAAGGTGAAGAGTACGCAGATGTGACAGCAGAAGACTTTGTCACAGGTCTTAAGTATGCGGCAGACAATAAAT
CTGAAACAATCTACTTGGTTCAGGATTCTGTAAAAGGGCTTAAGGACTATATTTCTGGGAAGATTGATTTCTCAGAAGTA
GGAATCAAAGCAGTTGATGATCATACCGTTGAGTATACTCTTAATGAGCCAGAAAGTTTCTGGAACTCTAAGACTACAAT
GGGAATTCTCTACCCAGTAAACAAAGACTTTTTGGAAAACCAAGGTGATAAGTTCGCTCAAGCAACTGATCCAACAAGCT
TGCTTTACAACGGACCTTTCTTGCTCAAATCATTGACTTCAAAATCTGAAATCCAATTTGAGAAGAATCCTAATTATTGG
GACAAAGAAAATGTTCACGTAGATGCAGTTAAACTCTCTTTCTATGATGGACAAGATCAAGGAAAACCTGCTGAGCAGTT
CAGCCAAGGCGCATTGACAACAGCCAGACTTTTCCCAACTAGTGCGACTTATGAAAAGGTTGAAAAAGACTTTAAAGATA
ATATCGTCTATACACCTCAAGATGCCTCAACTTTCTTAGTAGGTACTAACATTGATCGCCAGTCTTATAATCATACGGCT
AAGACATCAGAAGTTCAAAAGACTTCAACTAAGAAAGCCTTGCTTAACAAGGACTTCCGTCAGGCTTTGACCTTTGCCTT
CAATCGTGAGTCCTATGCATCTCAGATTAATGGTAAGGACGGAGCAGACAAACTTCTTCGTAACCTTTACATCCCACCTA
CATTTGTGCAGGCTGGTGACAAGTCCTTCGGTGACTTAGTTAAGGAAAAAGTAGTAACTTATGGCGACGAATGGAAAGAC
GTTGACTTCTCAGATGGTCAAGATGGTCTCTATAACGAGAACAAAGCAAAGGCTGAATTCGCTAAAGCAAAAGAAGCTTT
GAAAGCTGATGGAGTGGAATTCCCAATTCATCTGGACATTCCGGTTGATCAAACAGCTACTTCTAAAGTACAGCGCGTTC
AATCCCTCAAGCAATCCATTGAGAAGACTTTGGGAACAGATAATGTTGTGATTGATGTTCACCAATTGTCTAAGGATGAA
GTGACTAACATTACCTTGTTTGCTCCTTCTGCTGCTGAAGAGGACTGGGATATTTCAGATAATGTCGGCTGGTCTCCGGA
CTATCAAGATCCATCTACCTATCTTGATGTTATCAAACCTGGTGGTGAAAACACCAAGACCTTCTTAGGATTTGATGGCA
CAGATAATGCCGCAGCGAAACAAGTTGGTTTGGATGAATATACCAAGCTGGTTGACGAAGCTGGTGCAGAAAAGCAAGAT
TTGAACAAGCGTTATGAAAAATATGCGGCTGCTCAGGCTTGGCTGACTGATAGTGCTTTGTTGATTCCGGTAACTTCTAG
AACAGGTCGTCCAACCTTGACTAAGGTAGTGCCTTTCTCAGCACCGTTTGCTTGGTCTGGTGCTAAGGCGCGTGAAGCAG
CAAGTTATAAATACATGAAATTGCAGGATGAGCCTGTAACGACAAAAGATTATAATAGCGCTCAGGAAAAATGGAATAAA
GAACGTGCGGAATCTAATAAAAAAGCTCAAGAAGAATTAGCAGACCACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

60.061

100

0.603
  amiA Streptococcus salivarius strain HSISS4

60.061

100

0.603
  amiA3 Streptococcus thermophilus LMG 18311

59.758

100

0.6

Multiple sequence alignment