Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQM55_RS02295 Genome accession   NZ_LS483364
Coordinates   446764..447690 (+) Length   308 a.a.
NCBI ID   WP_002920135.1    Uniprot ID   A0A2X3YNE4
Organism   Streptococcus sanguinis strain NCTC11086     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 441764..452690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS02285 (NCTC11086_00452) amiA3 443227..445203 (+) 1977 WP_111675347.1 peptide ABC transporter substrate-binding protein Regulator
  DQM55_RS02290 (NCTC11086_00453) amiC 445268..446764 (+) 1497 WP_002902452.1 ABC transporter permease Regulator
  DQM55_RS02295 (NCTC11086_00454) amiD 446764..447690 (+) 927 WP_002920135.1 oligopeptide ABC transporter permease OppC Regulator
  DQM55_RS02300 (NCTC11086_00455) amiE 447699..448766 (+) 1068 WP_002902455.1 ABC transporter ATP-binding protein Regulator
  DQM55_RS02305 (NCTC11086_00456) amiF 448777..449703 (+) 927 WP_002922228.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34610.67 Da        Isoelectric Point: 9.8486

>NTDB_id=1138654 DQM55_RS02295 WP_002920135.1 446764..447690(+) (amiD) [Streptococcus sanguinis strain NCTC11086]
MATIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTITMLGILIAIILMSFIYPMFSNFDFNDVSKVNDFSMR
YIKPSAQYWFGTDSNGKSLFDGVWFGARNSILISIIATVINLAIGVIIGGIWGISKTVDRVMMEVYNIISNIPALLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNIMPQLVSVIVTTTSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLTFFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1138654 DQM55_RS02295 WP_002920135.1 446764..447690(+) (amiD) [Streptococcus sanguinis strain NCTC11086]
ATGGCTACAATTGATAAAAGCAAATTCCAATTTGTCAAACGTGACGATTTTGCCTCTGAAACGATTGATGCTCCAGCCTA
TTCTTACTGGAAATCAGTCATGCGTCAATTTCTGAAAAAGAAATCAACCATTACCATGCTAGGGATTCTGATTGCCATTA
TTCTCATGAGCTTCATTTATCCTATGTTTTCAAACTTCGACTTTAATGACGTGAGCAAGGTAAATGATTTTAGCATGCGT
TATATCAAACCAAGTGCTCAATACTGGTTTGGAACGGATAGTAATGGTAAGTCTCTCTTTGATGGTGTTTGGTTTGGTGC
TCGTAACTCTATTCTTATTTCGATTATTGCGACGGTTATTAATCTGGCCATCGGAGTCATCATCGGCGGTATCTGGGGAA
TTTCCAAAACAGTCGACCGTGTCATGATGGAAGTCTACAATATCATTTCAAACATCCCTGCCCTCTTGATTGTCATTGTC
TTGACCTACTCTATCGGTGCTGGTTTCTGGAATCTTATTTTTGCCATGACGATTACTGGTTGGGTCGGTATTGCCTACAC
TATCCGTGTGCAGATTATGCGCTATCGGGATTTGGAATACAACCTTGCCTCTCGTACTCTTGGTACACCAACTCTCAAGA
TTGTAACGAAGAACATTATGCCGCAGTTGGTATCTGTTATCGTGACCACCACTTCACAAATGTTGCCAAGCTTTATCTCT
TACGAAGCCTTTCTGTCCTTCTTTGGATTAGGGCTTCCTGTAACAGTGCCAAGTTTGGGACGCTTGATTTCAGATTATTC
TCAAAACGTGACGACGAATGCCTACCTCTTTTGGATTCCACTCACAACTCTGATTTTGGTATCCCTTACTTTCTTCGTAG
TTGGTCAAAACTTAGCCGACGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3YNE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.039

100

0.86
  amiD Streptococcus thermophilus LMG 18311

84.091

100

0.841
  amiD Streptococcus thermophilus LMD-9

84.091

100

0.841

Multiple sequence alignment