Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DQM55_RS02300 Genome accession   NZ_LS483364
Coordinates   447699..448766 (+) Length   355 a.a.
NCBI ID   WP_002902455.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11086     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 442699..453766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS02285 (NCTC11086_00452) amiA3 443227..445203 (+) 1977 WP_111675347.1 peptide ABC transporter substrate-binding protein Regulator
  DQM55_RS02290 (NCTC11086_00453) amiC 445268..446764 (+) 1497 WP_002902452.1 ABC transporter permease Regulator
  DQM55_RS02295 (NCTC11086_00454) amiD 446764..447690 (+) 927 WP_002920135.1 oligopeptide ABC transporter permease OppC Regulator
  DQM55_RS02300 (NCTC11086_00455) amiE 447699..448766 (+) 1068 WP_002902455.1 ABC transporter ATP-binding protein Regulator
  DQM55_RS02305 (NCTC11086_00456) amiF 448777..449703 (+) 927 WP_002922228.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39487.18 Da        Isoelectric Point: 4.7521

>NTDB_id=1138655 DQM55_RS02300 WP_002902455.1 447699..448766(+) (amiE) [Streptococcus sanguinis strain NCTC11086]
MTKNENVILTARDIVVEFDVRDRVLTAIRGVSLDLIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRVAQGTIDYRGKDL
TTLRSNKDWEPIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAKKMAIDYMSKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQQEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYEPKHPYTWSLLSSLPQLADANGALYSIPGTPPSLYSPIKGDAFALRSDYAMSIDFEEEAPAFKVSDTHWAK
TWLLHEDAPKVDKPEIIENLHEKIRSKMGFNQLEA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1138655 DQM55_RS02300 WP_002902455.1 447699..448766(+) (amiE) [Streptococcus sanguinis strain NCTC11086]
ATGACAAAGAATGAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTCGATGTTCGCGATCGTGTCTTAACCGC
CATTCGTGGAGTCTCTCTGGACTTGATTGAAGGCGAAGTTCTGGCTATTGTTGGTGAATCAGGTTCTGGTAAGTCTGTAT
TGACCAAGACCTTTACTGGAATGCTAGAAGAAAATGGCCGTGTAGCTCAAGGAACCATTGACTACCGTGGTAAAGATTTG
ACAACTCTTCGGAGTAACAAGGATTGGGAGCCGATTCGCGGTGCAAAAATTGCGACTATCTTCCAAGATCCGATGACGAG
CTTGGATCCCATTAATACGATTGGAAGCCAGATTACAGAAGTCATTATCAAGCACCAGGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGACTATATGAGTAAGGTCGGGATTCCAGATGCGGAAAAACGTTTCGAAGAATATCCTTTCCAATAC
TCAGGTGGTATGCGTCAGCGGATTGTTATTGCTATTGCCTTGGCTTGCCGTCCTGATATTCTTATCTGTGATGAGCCGAC
AACGGCCCTCGATGTAACGATTCAAGCGCAAATCATTGACTTGCTCAAATCCTTGCAGCAAGAATATCATTTCACAACCA
TCTTTATTACGCACGACCTTGGTGTTGTGGCTAGTATTGCAGATAAGGTTGCGGTCATGTATGCCGGTGAAATTGTAGAA
TACGGCACAGTTGAAGAAATCTTCTACGAGCCAAAACATCCTTACACATGGAGCTTGCTATCCAGCTTGCCTCAGTTGGC
AGATGCGAATGGGGCCCTCTACTCGATTCCTGGTACTCCGCCGTCGCTCTATTCACCGATCAAAGGAGATGCCTTTGCTT
TGCGTTCTGACTATGCCATGTCAATTGACTTTGAAGAAGAAGCACCGGCTTTCAAGGTCTCAGATACTCATTGGGCTAAG
ACTTGGTTGCTGCACGAAGATGCGCCTAAGGTTGATAAACCAGAGATTATCGAAAACCTGCATGAAAAAATTCGTTCGAA
AATGGGCTTCAATCAATTAGAAGCTTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.686

99.437

0.862
  amiE Streptococcus thermophilus LMG 18311

86.119

99.437

0.856
  amiE Streptococcus thermophilus LMD-9

86.119

99.437

0.856
  oppD Streptococcus mutans UA159

57.31

96.338

0.552

Multiple sequence alignment