Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQM55_RS02275 Genome accession   NZ_LS483364
Coordinates   441024..442994 (+) Length   656 a.a.
NCBI ID   WP_111675346.1    Uniprot ID   A0A2X3Y0L0
Organism   Streptococcus sanguinis strain NCTC11086     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 436024..447994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS02265 (NCTC11086_00449) pbp3 437315..438583 (-) 1269 WP_111675345.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM55_RS02270 (NCTC11086_00450) amiA 438876..440831 (+) 1956 WP_032912388.1 peptide ABC transporter substrate-binding protein Regulator
  DQM55_RS02275 (NCTC11086_00451) amiA3 441024..442994 (+) 1971 WP_111675346.1 peptide ABC transporter substrate-binding protein Regulator
  DQM55_RS02285 (NCTC11086_00452) amiA3 443227..445203 (+) 1977 WP_111675347.1 peptide ABC transporter substrate-binding protein Regulator
  DQM55_RS02290 (NCTC11086_00453) amiC 445268..446764 (+) 1497 WP_002902452.1 ABC transporter permease Regulator
  DQM55_RS02295 (NCTC11086_00454) amiD 446764..447690 (+) 927 WP_002920135.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72550.07 Da        Isoelectric Point: 4.5128

>NTDB_id=1138651 DQM55_RS02275 WP_111675346.1 441024..442994(+) (amiA3) [Streptococcus sanguinis strain NCTC11086]
MKTSKLAAAAGLVILSAGILAACSFGGSNSSGKNYSYVYTSDPDTLDYTVSNKRATNEIMANVVDGLLESDKYGNLVPSL
AEDWTVSKDGLTYTYKLREGVKWYTSDGEEYADVTAKDFVTSLKHAADSKSDGLYIVQKSIKGLDDYVNGKITDFSQVGV
KAVDDSTVQYTLNQPESFWNSKTTMGILFPINEEFLKSKGDKFAQGTDPTSVLYNGPFILKSITSKSQISLEKNPNYWDK
EKVKIDTVKFSYYDGQDTESLVRGFSDGNYTIARLFPNSSNFASVKKQYGDNIVYTPQGSGTFFVTTNIDRQSYEHTSKT
TDAQKASTKKALLNKDFRQALLFAFDRTAYSAQTNGEEAADKQLRNTFVPPTFVQANGKEFGSIVEENLASYGDEWKGVK
LDDAQDGFYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPVSSADTNGVKSVQSLKQSIEANLGSDNVVIDIQQMTDDDLN
NITYFATSASQEDWDLNNNLGWSPDYNDPSSYLEITGSKTGENVDGYFGFDPGTDNAAAKEAGFEEYDKLLEDAASENED
INKRYEKYAAAQAWLTDSALLMPAWSSGATPSVRKVVPFSGPFAWTGNKGEYSFKYVEIQDKPITTKEYEKAREKWAKEK
EESNKKAQAELAEHIK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1138651 DQM55_RS02275 WP_111675346.1 441024..442994(+) (amiA3) [Streptococcus sanguinis strain NCTC11086]
ATGAAAACATCTAAGTTAGCTGCAGCTGCTGGGCTTGTCATTCTCTCTGCAGGAATTTTGGCTGCCTGTTCGTTTGGTGG
TTCCAATTCATCTGGGAAAAACTATAGCTATGTTTATACCTCAGATCCAGATACACTGGATTACACTGTGTCCAATAAGC
GGGCAACCAATGAGATTATGGCTAATGTAGTGGATGGTTTGCTAGAAAGCGATAAGTATGGTAACTTAGTGCCTTCTCTA
GCGGAAGATTGGACCGTTTCAAAAGATGGTCTGACCTATACTTATAAGCTTCGTGAGGGAGTGAAGTGGTATACTTCTGA
TGGTGAAGAGTATGCAGATGTGACTGCTAAGGACTTTGTGACCAGTCTGAAGCATGCCGCAGACAGCAAGTCTGATGGTC
TCTATATCGTTCAAAAATCCATTAAAGGCTTGGATGACTATGTCAATGGTAAAATAACTGACTTCTCCCAAGTTGGTGTT
AAGGCGGTGGATGATTCTACTGTTCAATACACTCTCAATCAGCCAGAAAGTTTCTGGAATTCTAAGACAACCATGGGGAT
TCTTTTCCCGATTAACGAAGAATTTCTGAAATCAAAAGGTGACAAATTTGCTCAGGGGACAGATCCAACCAGCGTCCTCT
ATAACGGTCCGTTTATCTTGAAATCTATCACTTCCAAATCTCAAATTAGCTTAGAGAAGAATCCGAACTATTGGGATAAG
GAAAAGGTGAAAATCGATACTGTCAAGTTCTCTTACTATGATGGGCAAGATACAGAATCGCTGGTGCGTGGCTTCTCTGA
CGGCAACTACACCATTGCCCGTCTTTTCCCAAATAGCTCCAACTTTGCCAGTGTGAAGAAACAGTATGGAGACAATATCG
TCTACACTCCTCAAGGTTCAGGAACCTTCTTTGTTACAACTAATATCGACCGTCAGTCTTACGAGCATACTTCTAAGACA
ACGGATGCACAGAAAGCTTCCACTAAGAAAGCACTGCTCAATAAAGATTTCCGTCAGGCTCTGCTTTTTGCCTTTGACCG
TACTGCCTATTCTGCCCAAACCAATGGCGAAGAAGCAGCAGACAAGCAACTTCGTAATACCTTTGTTCCGCCAACCTTTG
TTCAGGCTAATGGTAAAGAGTTCGGCAGCATTGTAGAAGAAAATCTGGCTAGCTATGGCGATGAGTGGAAGGGAGTCAAA
TTAGACGACGCTCAGGATGGCTTTTATAATCCAGAAAAAGCTAAGGCAGAATTTGCCAAAGCTAAAGAAGCGCTGCAGGC
AGAAGGAGTGGAATTCCCTATTCATCTGGATATTCCGGTCAGCTCAGCAGATACCAATGGTGTTAAGAGTGTTCAGTCAC
TGAAGCAGTCTATTGAAGCTAATCTTGGATCTGACAATGTGGTGATTGATATTCAGCAGATGACAGATGATGACTTGAAT
AACATCACCTACTTTGCAACCTCGGCATCTCAAGAAGACTGGGATTTGAATAATAATCTCGGCTGGAGCCCAGATTATAA
CGATCCATCTTCTTATCTGGAAATCACTGGCTCTAAGACTGGTGAGAATGTTGACGGCTACTTTGGTTTTGACCCTGGCA
CAGATAATGCAGCAGCTAAAGAGGCCGGCTTTGAAGAGTATGACAAGCTCTTGGAAGATGCAGCTTCAGAAAACGAGGAT
ATTAACAAACGTTACGAAAAATATGCAGCAGCTCAGGCTTGGCTGACAGACAGTGCCCTGTTGATGCCAGCTTGGTCATC
TGGTGCAACACCAAGTGTCCGTAAGGTTGTTCCATTCTCAGGACCATTTGCTTGGACTGGAAACAAGGGTGAATACAGCT
TTAAATATGTTGAAATCCAAGATAAACCAATAACGACTAAAGAATATGAAAAAGCGCGTGAAAAATGGGCAAAAGAAAAG
GAAGAATCCAATAAAAAAGCTCAAGCAGAACTCGCAGAACATATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3Y0L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.788

100

0.601
  amiA3 Streptococcus thermophilus LMG 18311

59.029

100

0.593
  amiA Streptococcus salivarius strain HSISS4

58.967

100

0.591

Multiple sequence alignment