Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM55_RS02270 Genome accession   NZ_LS483364
Coordinates   438876..440831 (+) Length   651 a.a.
NCBI ID   WP_032912388.1    Uniprot ID   A0A2X3YF45
Organism   Streptococcus sanguinis strain NCTC11086     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 433876..445831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS02250 (NCTC11086_00446) - 434090..435322 (+) 1233 WP_111675344.1 cysteine desulfurase -
  DQM55_RS02255 (NCTC11086_00447) sufU 435309..435746 (+) 438 WP_061592734.1 Fe-S cluster assembly sulfur transfer protein SufU -
  DQM55_RS02260 (NCTC11086_00448) sufB 435764..437176 (+) 1413 WP_002893631.1 Fe-S cluster assembly protein SufB -
  DQM55_RS02265 (NCTC11086_00449) pbp3 437315..438583 (-) 1269 WP_111675345.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM55_RS02270 (NCTC11086_00450) amiA 438876..440831 (+) 1956 WP_032912388.1 peptide ABC transporter substrate-binding protein Regulator
  DQM55_RS02275 (NCTC11086_00451) amiA3 441024..442994 (+) 1971 WP_111675346.1 peptide ABC transporter substrate-binding protein Regulator
  DQM55_RS02285 (NCTC11086_00452) amiA3 443227..445203 (+) 1977 WP_111675347.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 651 a.a.        Molecular weight: 72274.96 Da        Isoelectric Point: 4.5803

>NTDB_id=1138650 DQM55_RS02270 WP_032912388.1 438876..440831(+) (amiA) [Streptococcus sanguinis strain NCTC11086]
MKKSKWLAITGLTVVSTLILAACGSSSASNTYSYVYLSDPDTLDYVNSNRATTSDVITNLVDGLLENDKYGNLVPSIAED
WTVSKDGLTYTYKLRKDAKWYTSDGEEYAEVKAQDFVAGLKHAADENSEALPIVQSSIKGLDAYVKGESKDFSTVGVKAV
DDHTVEYTLNQPESYWNSKTTMGILFPINEDFLKSQGKDFGTVKPSSILYNGPYVLKAFTSKSVIEYAKNQNYWDKDNVK
VENIKLTYFDGSDQESLIRNFSDGAYSQARLYPTSSNYASVEKQYKDNIIYTPQNSTSFYFAFNLNRKTYNHSSKTSDAQ
KASTTAAIQNKDFRQAINFAFDRTSFGAQMNGKDGATKLIRSLLVPPSFVQVDGKDFSDVVESQLSSYGDEWNGIKLADA
QDSIYNADKAKAEFAKAKETLQAEGVEFPIHIDVPVDQSDKVLVQRTNSFKQSVESALGQENVVIDVQQMSTDDFDNSAY
FAETAAQKDYDLNMSGWSADYQDPSTYLNIFNPETGDAADNIGIEKGKNADVANKVGLNEYKALLDEADQEKQDTDARYT
KYAAAQAWLTDSSIVIPSVSGGGSPVVQKVVPFTKSYSYVGIKGDAYVFKNMELQNDIVTAKDYEAALKKWEKEKEASNK
KAQEDLEKHIK

Nucleotide


Download         Length: 1956 bp        

>NTDB_id=1138650 DQM55_RS02270 WP_032912388.1 438876..440831(+) (amiA) [Streptococcus sanguinis strain NCTC11086]
ATGAAAAAATCTAAATGGTTGGCCATTACTGGACTGACAGTCGTGTCAACACTAATCTTAGCTGCTTGTGGAAGCTCTAG
TGCCAGTAATACCTATTCTTATGTCTATTTGAGTGATCCTGATACTTTGGACTATGTCAATTCAAATCGAGCTACTACGT
CCGATGTTATTACAAACTTGGTGGACGGCCTTTTAGAAAATGATAAATACGGCAATTTGGTTCCATCTATTGCGGAAGAC
TGGACTGTTTCAAAGGATGGTTTGACCTATACCTATAAGCTTCGTAAAGATGCTAAGTGGTACACATCAGATGGTGAAGA
ATATGCAGAGGTTAAAGCACAAGACTTTGTAGCAGGTTTGAAGCACGCGGCAGATGAAAATTCTGAAGCTCTTCCTATCG
TCCAAAGCTCTATCAAAGGCTTGGATGCCTATGTCAAAGGAGAGTCTAAAGACTTCTCAACAGTTGGAGTAAAAGCAGTT
GATGACCACACGGTCGAATACACGCTCAACCAGCCAGAAAGCTACTGGAACTCTAAGACGACCATGGGGATTCTGTTCCC
CATCAATGAGGATTTCTTGAAGTCACAAGGCAAAGATTTTGGTACCGTAAAACCTTCTTCCATTCTTTATAACGGACCTT
ATGTTCTGAAAGCATTCACTTCTAAGTCTGTCATTGAATATGCTAAAAACCAGAACTATTGGGATAAGGACAATGTCAAG
GTTGAAAATATAAAACTGACTTATTTTGATGGTTCGGATCAGGAATCCTTGATCCGCAACTTCTCAGACGGGGCTTATTC
TCAAGCACGGCTTTACCCTACGAGCTCTAACTATGCTTCTGTAGAAAAGCAGTACAAAGACAATATTATTTACACACCAC
AGAATTCAACTAGTTTCTATTTTGCTTTCAATCTGAATCGTAAGACTTATAATCATTCGTCTAAGACATCAGATGCTCAA
AAGGCATCAACTACAGCTGCTATTCAAAATAAAGACTTCCGTCAGGCGATTAACTTTGCCTTTGACCGGACATCTTTTGG
AGCTCAGATGAATGGTAAAGATGGAGCGACTAAACTCATCCGTAGCTTGCTTGTTCCTCCTAGCTTTGTGCAGGTGGACG
GTAAGGACTTCTCTGATGTAGTAGAGAGCCAACTTTCATCTTATGGAGATGAGTGGAATGGCATTAAGCTGGCGGATGCT
CAGGATAGTATCTACAATGCTGATAAAGCCAAGGCGGAATTTGCCAAGGCAAAAGAAACCTTGCAAGCTGAAGGTGTAGA
ATTCCCAATCCATATTGACGTCCCTGTCGATCAGTCTGACAAGGTTTTGGTACAACGGACGAACTCCTTCAAACAGTCTG
TCGAATCAGCGCTTGGCCAAGAAAATGTCGTTATTGATGTTCAGCAAATGTCAACAGATGACTTTGATAATTCTGCCTAC
TTTGCAGAAACAGCAGCTCAGAAAGACTACGATCTCAACATGTCTGGCTGGTCAGCAGACTACCAAGATCCATCAACTTA
TCTGAATATCTTTAACCCTGAAACAGGTGATGCTGCAGATAATATTGGTATAGAAAAAGGGAAAAATGCTGATGTGGCAA
ATAAGGTTGGCTTGAATGAATACAAGGCTTTGCTGGATGAAGCTGATCAAGAAAAACAAGATACAGATGCTCGTTACACC
AAGTACGCAGCAGCTCAGGCTTGGTTGACGGATAGCTCCATTGTTATTCCTAGTGTTTCTGGTGGTGGTTCACCAGTCGT
TCAGAAGGTTGTGCCATTTACCAAGTCTTACTCTTATGTCGGAATTAAAGGAGATGCCTATGTCTTTAAGAACATGGAGC
TCCAAAATGATATTGTTACAGCTAAAGACTATGAAGCGGCTCTTAAGAAATGGGAAAAAGAAAAGGAAGCATCCAATAAA
AAAGCCCAAGAAGACTTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(73-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3YF45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.686

100

0.582
  amiA3 Streptococcus thermophilus LMD-9

56.297

100

0.57
  amiA3 Streptococcus thermophilus LMG 18311

55.994

100

0.567

Multiple sequence alignment