Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   DQL39_RS07640 Genome accession   NZ_LS483353
Coordinates   1486983..1487309 (-) Length   108 a.a.
NCBI ID   WP_002986552.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC4001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1481983..1492309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL39_RS07605 - 1482801..1483109 (-) 309 WP_030126458.1 hypothetical protein -
  DQL39_RS07610 (NCTC4001_01511) - 1483296..1484492 (-) 1197 WP_038433085.1 acetate kinase -
  DQL39_RS07615 (NCTC4001_01512) comYH 1484551..1485504 (-) 954 WP_038433084.1 class I SAM-dependent methyltransferase Machinery gene
  DQL39_RS07620 (NCTC4001_01513) comGG 1485602..1485928 (-) 327 WP_002986539.1 competence type IV pilus minor pilin ComGG -
  DQL39_RS07625 (NCTC4001_01514) comYF 1485912..1486346 (-) 435 WP_002986542.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL39_RS07630 (NCTC4001_01515) comGE 1486339..1486623 (-) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE -
  DQL39_RS07635 (NCTC4001_01516) comGD 1486580..1487008 (-) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  DQL39_RS07640 (NCTC4001_01517) comYC 1486983..1487309 (-) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL39_RS07645 (NCTC4001_01518) comYB 1487311..1488345 (-) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL39_RS07650 (NCTC4001_01519) comYA 1488281..1489219 (-) 939 WP_032460336.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL39_RS07655 (NCTC4001_01520) - 1489312..1489677 (-) 366 WP_002986560.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12376.36 Da        Isoelectric Point: 9.8992

>NTDB_id=1138118 DQL39_RS07640 WP_002986552.1 1486983..1487309(-) (comYC) [Streptococcus pyogenes strain NCTC4001]
MINQWNNLRHKKLKGFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLSQLKA
DGSITEKQEKAYQDYYDKHKNEKARLSN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1138118 DQL39_RS07640 WP_002986552.1 1486983..1487309(-) (comYC) [Streptococcus pyogenes strain NCTC4001]
ATGATTAATCAATGGAACAACTTACGACACAAGAAGCTAAAAGGATTTACTCTTCTAGAAATGTTATTGGTGATTCTTGT
TATCAGTGTTTTGATGCTATTATTTGTGCCTAATTTAAGCAAGCAAAAAGACAGGGTTACAGAAACAGGTAATGCCGCTG
TTGTTAAATTAGTGGAGAATCAAGCAGAACTATATGAATTATCTCAAGGCTCAAAACCAAGTTTGAGCCAGTTAAAGGCA
GATGGTAGTATCACTGAGAAACAAGAAAAAGCTTATCAAGACTATTATGACAAACATAAAAATGAAAAAGCCCGTCTTAG
CAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

56.19

97.222

0.546
  comGC Lactococcus lactis subsp. cremoris KW2

56.863

94.444

0.537
  comGC/cglC Streptococcus mitis SK321

61.957

85.185

0.528
  comGC/cglC Streptococcus pneumoniae R6

60.87

85.185

0.519
  comGC/cglC Streptococcus pneumoniae TIGR4

60.87

85.185

0.519
  comGC/cglC Streptococcus pneumoniae D39

60.87

85.185

0.519
  comGC/cglC Streptococcus mitis NCTC 12261

60.87

85.185

0.519
  comGC/cglC Streptococcus pneumoniae Rx1

60.87

85.185

0.519
  comYC Streptococcus mutans UA140

55.208

88.889

0.491
  comYC Streptococcus mutans UA159

55.208

88.889

0.491
  comYC Streptococcus suis isolate S10

59.259

75

0.444

Multiple sequence alignment