Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQL23_RS04130 Genome accession   NZ_LS483341
Coordinates   868118..870109 (+) Length   663 a.a.
NCBI ID   WP_060553921.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 863118..875109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS04120 (NCTC7865_00823) amiA3 863650..865608 (+) 1959 WP_060553919.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04125 (NCTC7865_00824) amiA 865858..867840 (+) 1983 WP_060553920.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04130 (NCTC7865_00825) amiA 868118..870109 (+) 1992 WP_060553921.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04135 (NCTC7865_00826) amiC 870174..871670 (+) 1497 WP_045634046.1 ABC transporter permease Regulator
  DQL23_RS04140 (NCTC7865_00827) amiD 871670..872596 (+) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  DQL23_RS04145 (NCTC7865_00828) amiE 872605..873672 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  DQL23_RS04150 (NCTC7865_00829) amiF 873683..874606 (+) 924 WP_060553922.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 73325.75 Da        Isoelectric Point: 5.0825

>NTDB_id=1137480 DQL23_RS04130 WP_060553921.1 868118..870109(+) (amiA) [Streptococcus gordonii strain NCTC7865]
MKKGKILALAGVALLATGVLAACSNSTSNTSNTSSSGADQAFNYIYEVDPENLNYLISSKAATTDLTANLIDGLLENDNY
GNLVPSMAEDWTVSKDGLTYTYKLRKDAKWYTSDGEEYADVKAQDFVAGLKYAADNKSETLYLVQSSIKGLDDYVNGKTK
DFSSVGVKAVDDHTVQYTLNEPESFWNSKTTMGILYPVNEEFLKSKGDKFAQAADPTSLLYNGPFLLKSITSKSSIEFAK
NPNYWDKDNVHVSDVKLTYFDGQDQGKPAEQFAKGALSAARLAPTSATFSKVEKEFKDNIVYTPQDSSSYLVGVNIDRQA
YNHTAKSSDAQKSSTKKALMNKDFRQALSFAFDRTAYASQVNGKEGATKMLRNLYIPPTFVQADGKSFGELVKEKVASYG
DEWKDVNFDDAQDGLYNKEKAKAEFAKAKKALQEEGVEFPIHLDMPVDQTASAKVQRVQSLKQSIESSLGTDNVVVDIHQ
MKTDDVLNITYYAASAAEEDWDISDNVGWSPDYQDPSTYLEIIKPGGENTKTFLGFDGKENAAADQVGLKEYAKLVDEAS
AEKTDVNKRYEKYAAAQAWLTDSALLIPTTSRTGRPVLTKIVPFTAPFAWSGAKGRDMASYKYLKLQDKAVTAKEYQKAQ
EKWNKERAESNKKAQEELEKHVK

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=1137480 DQL23_RS04130 WP_060553921.1 868118..870109(+) (amiA) [Streptococcus gordonii strain NCTC7865]
ATGAAGAAAGGTAAAATCCTTGCACTTGCGGGAGTTGCTCTCTTGGCTACTGGCGTTCTTGCAGCGTGCTCAAATTCTAC
ATCAAACACATCAAACACATCAAGCTCTGGCGCAGATCAAGCTTTTAACTATATCTACGAAGTTGATCCAGAAAACTTGA
ATTATTTGATCTCTAGTAAAGCAGCAACAACTGACCTTACAGCTAACTTGATTGATGGTCTTTTGGAAAATGACAACTAT
GGAAACTTGGTTCCATCGATGGCTGAAGATTGGACAGTGTCTAAGGATGGCTTGACTTATACTTATAAACTTCGTAAGGA
TGCTAAATGGTATACTTCTGATGGTGAAGAATATGCTGATGTCAAGGCACAAGACTTTGTGGCAGGTCTAAAGTACGCTG
CTGACAACAAGTCTGAAACTCTTTATCTTGTTCAAAGTTCTATCAAGGGCTTGGATGACTACGTTAATGGTAAAACAAAG
GATTTCTCATCAGTTGGTGTTAAAGCAGTTGATGACCACACAGTTCAATATACTTTAAATGAGCCAGAAAGTTTCTGGAA
CTCTAAAACAACAATGGGTATCCTTTATCCAGTCAATGAAGAGTTCTTGAAGTCTAAAGGCGACAAGTTTGCTCAAGCTG
CTGACCCAACTAGTCTTCTATACAACGGGCCATTCCTACTAAAATCTATCACATCTAAATCATCTATTGAATTTGCTAAA
AATCCAAATTATTGGGATAAAGATAATGTCCATGTGAGCGATGTTAAATTAACATACTTTGACGGGCAAGATCAAGGTAA
ACCAGCTGAGCAATTTGCTAAAGGTGCTCTAAGTGCGGCTAGACTGGCTCCTACAAGTGCTACCTTCTCTAAAGTAGAAA
AAGAATTCAAAGATAATATCGTTTATACTCCTCAAGATTCTTCAAGCTATTTAGTTGGGGTGAACATTGATCGTCAAGCG
TACAATCACACAGCTAAGTCAAGTGATGCACAAAAATCATCAACAAAGAAAGCTTTGATGAATAAAGATTTCCGTCAAGC
TTTGAGTTTTGCATTCGACAGAACGGCTTATGCTTCACAAGTTAACGGTAAAGAAGGGGCTACGAAAATGCTCCGCAATC
TCTACATTCCACCTACTTTTGTTCAGGCAGATGGTAAGAGCTTCGGCGAACTTGTGAAAGAAAAAGTGGCTAGCTATGGA
GATGAGTGGAAAGATGTAAACTTCGACGATGCTCAAGATGGTCTTTACAATAAAGAAAAAGCTAAAGCTGAATTTGCGAA
AGCTAAAAAAGCTCTCCAAGAAGAAGGTGTAGAATTCCCTATTCATTTGGATATGCCAGTAGACCAAACTGCTAGTGCTA
AAGTTCAGCGTGTTCAATCTTTGAAACAATCAATTGAGAGCTCGCTTGGGACAGACAATGTGGTTGTTGACATTCATCAA
ATGAAGACTGATGATGTTTTGAACATCACATATTATGCTGCTTCAGCTGCTGAAGAAGACTGGGATATTTCTGATAATGT
TGGTTGGTCTCCTGACTATCAAGATCCATCAACTTATCTTGAAATTATCAAGCCTGGCGGTGAAAATACCAAGACATTCT
TAGGGTTTGATGGTAAAGAAAATGCAGCTGCAGACCAAGTTGGTTTGAAGGAGTATGCTAAGCTAGTTGATGAAGCTAGC
GCTGAAAAGACAGATGTAAATAAACGCTATGAAAAATATGCAGCCGCTCAAGCATGGCTAACAGATAGCGCCTTGTTGAT
ACCAACAACAAGTAGGACTGGACGTCCAGTTTTAACTAAGATTGTACCATTTACAGCTCCTTTTGCTTGGTCTGGTGCTA
AAGGTCGTGACATGGCAAGTTACAAATATCTGAAATTACAAGATAAAGCTGTCACAGCCAAAGAATATCAGAAAGCTCAA
GAAAAATGGAATAAAGAACGTGCAGAATCTAATAAAAAAGCACAAGAAGAGTTAGAAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(83-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.15

100

0.603
  amiA3 Streptococcus thermophilus LMD-9

59.85

100

0.6
  amiA3 Streptococcus thermophilus LMG 18311

59.398

100

0.596

Multiple sequence alignment