Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQL23_RS04125 Genome accession   NZ_LS483341
Coordinates   865858..867840 (+) Length   660 a.a.
NCBI ID   WP_060553920.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 860858..872840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS04115 (NCTC7865_00822) amiA 861472..863433 (+) 1962 WP_060553918.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04120 (NCTC7865_00823) amiA3 863650..865608 (+) 1959 WP_060553919.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04125 (NCTC7865_00824) amiA 865858..867840 (+) 1983 WP_060553920.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04130 (NCTC7865_00825) amiA 868118..870109 (+) 1992 WP_060553921.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04135 (NCTC7865_00826) amiC 870174..871670 (+) 1497 WP_045634046.1 ABC transporter permease Regulator
  DQL23_RS04140 (NCTC7865_00827) amiD 871670..872596 (+) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73551.95 Da        Isoelectric Point: 5.0817

>NTDB_id=1137479 DQL23_RS04125 WP_060553920.1 865858..867840(+) (amiA) [Streptococcus gordonii strain NCTC7865]
MKKRNVLAMAGVTLLAAGVLAACSSSKSGSSNTNTNFTYVYQTDPETLDYTLSNKTSTHEITSNVIDGLLENDQYGNLVP
SLAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYADVTAKDFVTGLKHAVDKKSEALYMVENSIKGLDAYIKGETKDFSTV
GIKAVDDHTLQFTLEHPESFWNSKLTMGVLFPVNEEFLKSKGDKFGQATDPTSILYNGPFLLKGITSKSSIEFAKNQNYW
DKDNVHVDNVKLAFYDGQDQESLIRGFKDGSYSKARVYPRSSNYASVEKEYKDNIIFSPQGSSTFTVFTNIDRQSYNHTS
KTTDTQKTSTKKAILNKDFRQALNFAYDRKAYSDQVNGEEGALKSVRNLYVPPTFVQVGDKNFGDVVKEDVVKYGDEWKD
VDFSDATNGLYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPTIQTNTLIVKRAQSLKQSIEKSLGTDNVVVDIQMLSQED
VQNITYYAPNAAALDWDITDQLGWTPDFQDPSSYLEILHPETGDNTKSFLGFEAGSGNAAAKQIGMDEFGKLLDEAAAEK
TDTTKRYEKYAAAQAWLTDSSILIPSTSNGGGAGVTRVVPFTAAFGWTGNKSDGAFLYKYIKLQDKPVTKKEYQEAEKKW
IKEKEESNKKAQEELEKHIK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1137479 DQL23_RS04125 WP_060553920.1 865858..867840(+) (amiA) [Streptococcus gordonii strain NCTC7865]
ATGAAGAAACGCAATGTTTTAGCCATGGCAGGTGTTACTTTACTTGCTGCTGGTGTCTTGGCTGCCTGCTCTAGTTCTAA
GTCTGGATCATCAAACACAAATACTAATTTTACTTATGTTTATCAAACAGACCCAGAAACTTTGGACTATACCTTATCAA
ATAAGACCTCTACCCATGAAATCACATCTAATGTCATTGATGGTTTGCTTGAAAATGACCAATATGGTAATCTTGTTCCA
TCTCTTGCAGAAGACTGGAGTGTATCTAAGGACGGCCTGACTTACACCTACAAATTGCGTAAGGGAGTTAAATGGTATAC
ATCCGATGGCGAAGAATATGCAGATGTAACTGCTAAGGATTTTGTGACAGGTTTGAAACATGCTGTAGATAAAAAGTCAG
AAGCTCTTTATATGGTGGAAAATTCCATCAAAGGATTGGATGCCTATATCAAAGGGGAAACAAAGGACTTCTCAACAGTA
GGGATTAAAGCTGTCGATGATCATACCTTGCAGTTCACTTTGGAACACCCAGAAAGCTTCTGGAATTCTAAATTAACAAT
GGGTGTCCTATTCCCTGTTAATGAAGAGTTCTTGAAATCTAAAGGAGACAAATTTGGTCAAGCTACTGACCCGACAAGTA
TCCTTTATAATGGTCCTTTCTTGTTGAAAGGTATAACTTCGAAGTCCTCTATCGAGTTTGCGAAAAATCAGAACTATTGG
GATAAGGATAATGTCCATGTTGACAATGTTAAATTAGCTTTCTATGATGGGCAAGACCAAGAATCCTTAATTCGTGGCTT
TAAAGACGGCTCTTATAGTAAGGCACGTGTTTATCCTCGTAGTTCAAACTATGCGTCTGTAGAGAAAGAATATAAAGACA
ATATTATCTTTAGTCCTCAAGGTTCATCTACTTTCACTGTTTTCACAAACATTGATCGCCAAAGTTATAATCATACTTCT
AAAACGACAGATACACAAAAAACATCTACCAAAAAAGCTATCTTAAACAAAGACTTCCGTCAGGCTTTGAACTTTGCTTA
TGACCGTAAGGCCTATTCTGACCAAGTGAACGGTGAAGAAGGAGCCCTTAAATCTGTTCGTAACCTCTATGTCCCACCAA
CATTTGTTCAAGTTGGTGACAAGAATTTTGGAGATGTCGTAAAAGAAGATGTTGTCAAATACGGCGATGAGTGGAAAGAT
GTTGATTTCTCAGATGCGACTAACGGTCTCTACAATCCAGAGAAAGCAAAAGCAGAATTCGCCAAAGCAAAAGAAGCTCT
TCAAGCAGAAGGCGTGGAATTCCCAATTCATCTGGACATACCAACAATCCAGACCAATACTCTTATTGTAAAACGGGCTC
AATCTTTGAAACAGTCTATTGAAAAGAGTTTAGGAACAGACAATGTTGTGGTTGATATTCAAATGTTATCCCAAGAAGAT
GTTCAGAACATCACTTACTACGCTCCAAATGCAGCTGCTTTGGATTGGGATATCACAGACCAACTTGGCTGGACTCCTGA
CTTCCAAGATCCGTCATCCTACTTAGAGATTCTACACCCAGAAACAGGTGATAACACGAAGTCTTTCCTTGGATTTGAAG
CTGGTAGTGGAAATGCTGCTGCTAAACAAATCGGCATGGATGAATTTGGAAAATTGTTGGATGAAGCTGCTGCTGAAAAG
ACAGATACAACAAAACGCTATGAAAAATATGCAGCTGCTCAAGCTTGGTTGACAGATAGTTCGATCTTGATTCCAAGCAC
TTCAAATGGTGGAGGAGCTGGTGTAACTAGGGTTGTGCCATTCACTGCTGCTTTTGGTTGGACAGGTAACAAATCAGATG
GTGCCTTCCTCTACAAATACATCAAGCTTCAAGATAAACCAGTGACGAAGAAAGAGTATCAAGAAGCTGAGAAGAAATGG
ATTAAAGAAAAAGAAGAATCTAACAAAAAAGCTCAAGAAGAACTTGAGAAGCATATAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.968

100

0.611
  amiA3 Streptococcus thermophilus LMD-9

60.212

100

0.603
  amiA3 Streptococcus thermophilus LMG 18311

60.061

100

0.602

Multiple sequence alignment