Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQL23_RS04120 Genome accession   NZ_LS483341
Coordinates   863650..865608 (+) Length   652 a.a.
NCBI ID   WP_060553919.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 858650..870608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS04110 (NCTC7865_00821) pbp3 859943..861181 (-) 1239 WP_060553917.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL23_RS04115 (NCTC7865_00822) amiA 861472..863433 (+) 1962 WP_060553918.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04120 (NCTC7865_00823) amiA3 863650..865608 (+) 1959 WP_060553919.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04125 (NCTC7865_00824) amiA 865858..867840 (+) 1983 WP_060553920.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04130 (NCTC7865_00825) amiA 868118..870109 (+) 1992 WP_060553921.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72328.02 Da        Isoelectric Point: 4.9653

>NTDB_id=1137478 DQL23_RS04120 WP_060553919.1 863650..865608(+) (amiA3) [Streptococcus gordonii strain NCTC7865]
MNKKKRFVGVGLAVLSSVILAACSSTASNTKVYSYVYSNDPDSLDYVVANRATTSDVTGNLIDGLLENDKYGNLIPSLAE
DWTVSKDGLTYTYKLRKDAKWYTSDGEEYAEVKAQDFVTGLKHAADGKSEALYLVQNSIKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLNKPESYWNSKTTSGILFPINADFLASQGNSFGSAKPSSILYNGPYILKSLTAKSSIEYKKNENYWDKENV
PIEDVKLSYYDGSDQESLVRNFSDGAYTLARVFPNSSNYASVKKKYADNITYSQQGGTSFFYVFNVNRQSYNHTSKKDDK
QKSDTKAAILNKDFRQAIGFAFDRKAYAAQTNGEDGASMILRNLAVPPTFVQIRDRNFGDVVKEKLASYGQEWSDVKLED
AQDGLYNSEKAKAEFAKAKEALQAQGVNFPIHLDLPVSQSDKAGIQQASSFKQSVESALGKDNVVVDLQQMSEDDFNNTG
YFANSAAQKDYDLSTSGWTPDYQDPSTYLDVFDPTNGGLLQAIGIEPGQNQDVVSALGLNDYKALNDDANKETSDTSVRY
EKYANSQAWLTDSGLTLPSISNGANPLVQKSVPFTRAYSWIGSKGTATNYKYMQLQDDVLTSKDYEKAFKTWMKEKESSN
EKAQKELEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1137478 DQL23_RS04120 WP_060553919.1 863650..865608(+) (amiA3) [Streptococcus gordonii strain NCTC7865]
ATGAATAAGAAAAAAAGATTTGTTGGAGTTGGACTTGCAGTTTTATCTTCTGTGATTTTAGCTGCTTGTAGTTCAACAGC
ATCTAATACAAAGGTGTATTCTTATGTATATAGTAATGATCCAGATTCTTTGGACTATGTAGTTGCTAATCGTGCTACCA
CTTCAGATGTGACTGGAAATCTGATTGATGGTTTGCTTGAAAATGATAAGTATGGGAATTTGATTCCGTCTCTTGCTGAA
GATTGGACCGTATCTAAGGATGGTTTGACCTATACTTACAAGCTTCGAAAAGATGCTAAGTGGTATACCTCAGATGGCGA
AGAGTATGCTGAGGTAAAAGCTCAAGATTTTGTGACAGGATTGAAGCACGCAGCCGATGGCAAATCTGAAGCTCTTTACC
TTGTTCAAAATTCTATCAAAGGATTGGATGCCTATATCAAAGGGGAAACTAAAGACTTTTCTACTGTAGGTGTAAAAGCA
CTGGATGATTATACAGTGCAGTATACTTTGAATAAGCCAGAAAGTTACTGGAATTCGAAGACGACTAGTGGTATCTTATT
CCCGATAAATGCTGATTTCTTAGCTTCCCAAGGAAATAGTTTTGGCTCAGCTAAACCGTCTAGTATTTTGTACAATGGTC
CTTATATTTTGAAGTCTTTAACGGCAAAATCTTCTATTGAATATAAGAAAAACGAAAATTATTGGGATAAAGAAAATGTT
CCGATTGAAGATGTAAAACTATCTTATTATGATGGATCTGATCAAGAATCCTTAGTTCGTAATTTTAGCGATGGTGCCTA
TACCCTGGCTCGTGTATTCCCAAATAGTTCGAACTATGCTTCTGTTAAAAAGAAATATGCGGATAATATTACTTATTCTC
AACAAGGTGGAACTTCATTTTTCTATGTCTTTAATGTAAATCGTCAGTCTTATAATCATACTTCTAAGAAAGACGACAAG
CAAAAATCAGATACCAAGGCTGCTATTTTAAACAAAGACTTCCGTCAGGCAATCGGTTTTGCCTTTGATAGAAAAGCTTA
CGCAGCTCAAACGAATGGCGAAGACGGCGCATCAATGATCTTGCGCAATCTTGCAGTACCTCCGACATTTGTGCAGATTA
GGGATCGGAATTTTGGAGATGTCGTGAAAGAAAAACTAGCGAGCTACGGTCAAGAGTGGTCTGATGTCAAGTTAGAGGAT
GCCCAAGACGGTCTATATAATTCTGAAAAAGCTAAAGCAGAGTTTGCAAAAGCTAAAGAAGCGCTGCAGGCTCAAGGTGT
AAATTTCCCGATTCATCTAGATTTGCCAGTAAGTCAGTCTGATAAGGCCGGAATCCAACAAGCTAGTTCCTTTAAACAGT
CTGTTGAGTCAGCGCTTGGAAAGGACAATGTAGTAGTTGATCTCCAGCAGATGTCCGAAGATGACTTTAATAATACGGGT
TATTTCGCCAACTCGGCTGCTCAAAAAGATTATGATCTTTCAACCAGTGGTTGGACTCCTGATTATCAAGATCCTTCTAC
ATATTTAGATGTTTTTGATCCGACAAATGGTGGATTGCTACAAGCGATTGGAATTGAACCGGGTCAAAATCAAGACGTTG
TGTCAGCTCTAGGATTAAATGATTATAAAGCTCTGAATGATGATGCAAATAAGGAAACGTCTGATACGAGTGTGCGTTAT
GAAAAATATGCAAATTCTCAAGCCTGGTTGACAGATAGTGGTTTGACCCTTCCAAGTATCTCAAACGGTGCTAATCCGCT
GGTTCAAAAATCAGTTCCATTTACTAGAGCCTACTCTTGGATTGGAAGTAAAGGGACAGCTACAAATTATAAATACATGC
AACTTCAAGACGATGTCTTGACTTCTAAGGATTATGAGAAGGCATTTAAAACTTGGATGAAAGAAAAAGAATCATCTAAT
GAAAAAGCTCAAAAAGAGTTAGAAAAACATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.447

100

0.589
  amiA Streptococcus salivarius strain HSISS4

58.384

100

0.587
  amiA3 Streptococcus thermophilus LMG 18311

58.143

100

0.586

Multiple sequence alignment