Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQL23_RS04115 Genome accession   NZ_LS483341
Coordinates   861472..863433 (+) Length   653 a.a.
NCBI ID   WP_060553918.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 856472..868433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS04100 (NCTC7865_00819) sufU 857664..858101 (+) 438 WP_060553915.1 Fe-S cluster assembly sulfur transfer protein SufU -
  DQL23_RS04105 (NCTC7865_00820) sufB 858119..859531 (+) 1413 WP_060553916.1 Fe-S cluster assembly protein SufB -
  DQL23_RS04110 (NCTC7865_00821) pbp3 859943..861181 (-) 1239 WP_060553917.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL23_RS04115 (NCTC7865_00822) amiA 861472..863433 (+) 1962 WP_060553918.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04120 (NCTC7865_00823) amiA3 863650..865608 (+) 1959 WP_060553919.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04125 (NCTC7865_00824) amiA 865858..867840 (+) 1983 WP_060553920.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72652.81 Da        Isoelectric Point: 4.9229

>NTDB_id=1137477 DQL23_RS04115 WP_060553918.1 861472..863433(+) (amiA) [Streptococcus gordonii strain NCTC7865]
MKPVKKLAVLGLTLASVFTLAACGNSNSGASKTYSYVYSTDPDTLDYTNTNRSTTSDVIANLVDGLLENDRYGNLVPSLA
EDWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADSNSDALPIVQSSIKGLDAYVKGESKDFSTVGVK
AIDDYTVQYTLNQPESYWNSKTTLGILFPINEEFLKSSGKDFGTVKPSGILYNGPYFLKSFTSKSSIEYTKNDNYWDKNN
VKISDVKLTYFDGSDQEALVRNFKDGTYTQARLYPNSSSYASVQKQYKDNIVYSPQDATTFFYAFNYNRKAYNFTAKTTD
AQKTSTTAALLNKDFRQAINFAFNRTAYGAQQNGQEGATSSLRNSLVPPTFVQIGEKNFGDIVKEDLASYGDEWKGVKLD
DAQDGLFNVEKAKAEFAKAKDALQAQGVEFPIHLDLPVDQTNNLLVQQANSFKQSVEEALGKDNVVIDVQQMSTENKNNV
TYFAETAAQKDYDINIAGWGPDFQDPSTYLNIFDPDKGDMLQNIGLEKGQNADLADKLGLNEFKKLNEEADSEKQDTTAR
YTKYAAAQAWLTDSSLVIPIQSNGGIPLVMKAVPFTKPYSLVGIKGDVYVFKYREVQNDIVTAKDYKAAEKKWKKEKEKS
NAKAQEELADHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1137477 DQL23_RS04115 WP_060553918.1 861472..863433(+) (amiA) [Streptococcus gordonii strain NCTC7865]
ATGAAACCAGTGAAAAAATTAGCTGTTTTAGGGCTTACGCTTGCTTCTGTTTTTACCTTAGCAGCATGTGGAAATTCTAA
CTCAGGGGCTTCAAAGACTTATTCTTATGTCTATTCAACAGACCCAGATACCTTGGATTATACAAATACTAATCGTTCAA
CTACGTCTGATGTTATTGCAAACTTAGTGGATGGACTATTAGAAAATGATAGATACGGAAATCTTGTGCCATCTCTAGCA
GAAGATTGGACGGTATCAAAAGATGGTTTGACTTATACATATAAGCTTCGGAAGGGTGCTAAATGGTATACTTCTGAGGG
TGAAGAATATGCAGAAGTCAAAGCGCAGGACTTTGTTACTGGTTTGAAGCACGCGGCTGACAGCAATTCAGATGCGCTTC
CAATTGTTCAAAGCTCTATCAAAGGTTTGGATGCTTATGTAAAAGGTGAAAGTAAGGACTTCTCAACGGTTGGAGTTAAG
GCGATTGACGATTATACAGTCCAATATACACTCAATCAGCCAGAGAGTTATTGGAATTCTAAAACCACATTGGGTATTCT
TTTCCCAATTAACGAAGAATTTTTAAAATCATCTGGTAAAGATTTCGGTACTGTAAAACCTTCAGGAATTCTCTATAACG
GTCCATATTTCCTGAAGTCCTTCACATCTAAATCATCTATTGAATATACAAAAAATGACAACTATTGGGATAAGAACAAT
GTGAAGATTTCAGACGTCAAGTTGACTTACTTTGATGGTTCTGATCAAGAGGCGCTTGTTCGTAACTTTAAAGATGGTAC
ATACACACAAGCTCGTTTGTATCCAAATAGTTCAAGTTATGCTTCAGTGCAAAAACAATACAAAGATAATATTGTATACT
CTCCTCAAGATGCAACGACATTCTTCTATGCCTTTAACTACAACCGTAAAGCCTACAATTTCACAGCCAAGACAACAGAT
GCACAAAAGACATCTACAACAGCTGCTCTCTTAAACAAAGATTTCCGTCAGGCAATCAACTTCGCTTTTAATCGGACGGC
TTATGGAGCGCAGCAAAACGGTCAAGAGGGGGCAACTAGCTCACTTAGAAACAGCTTAGTACCGCCAACATTCGTTCAGA
TTGGCGAAAAGAACTTCGGAGACATCGTTAAAGAAGATTTGGCGAGCTATGGTGATGAGTGGAAGGGTGTCAAATTAGAC
GATGCTCAAGATGGACTCTTTAATGTTGAAAAAGCTAAGGCAGAATTTGCCAAAGCAAAAGATGCTCTCCAAGCACAAGG
TGTTGAATTCCCGATTCACTTAGATCTTCCTGTTGATCAAACAAACAACCTCTTGGTACAACAGGCTAATTCATTTAAAC
AATCAGTTGAAGAAGCCCTTGGTAAAGATAATGTTGTTATTGATGTACAGCAAATGTCTACAGAAAATAAAAATAATGTA
ACGTACTTTGCGGAGACTGCGGCTCAAAAAGACTACGATATCAACATTGCTGGTTGGGGTCCTGACTTCCAAGATCCATC
AACTTATTTGAATATTTTTGATCCAGATAAAGGAGATATGCTCCAAAATATCGGTTTGGAAAAAGGACAAAATGCTGATT
TAGCAGACAAACTGGGCTTGAACGAATTTAAGAAATTAAATGAAGAGGCAGATTCTGAAAAACAAGATACAACTGCTCGC
TATACAAAATATGCAGCAGCTCAAGCTTGGTTAACAGATAGCTCTTTGGTCATTCCAATTCAATCAAACGGTGGTATTCC
GCTTGTTATGAAGGCAGTTCCGTTCACAAAACCTTACTCTCTGGTTGGTATCAAAGGTGATGTTTACGTCTTTAAGTACA
GAGAAGTTCAAAATGACATTGTAACGGCGAAAGACTACAAAGCCGCTGAGAAAAAATGGAAGAAAGAAAAAGAAAAATCA
AATGCCAAAGCTCAAGAAGAATTGGCTGATCATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.534

100

0.579
  amiA3 Streptococcus thermophilus LMG 18311

56.904

100

0.574
  amiA3 Streptococcus thermophilus LMD-9

56.904

100

0.574

Multiple sequence alignment