Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQL23_RS04140 Genome accession   NZ_LS483341
Coordinates   871670..872596 (+) Length   308 a.a.
NCBI ID   WP_045634045.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 866670..877596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS04130 (NCTC7865_00825) amiA 868118..870109 (+) 1992 WP_060553921.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04135 (NCTC7865_00826) amiC 870174..871670 (+) 1497 WP_045634046.1 ABC transporter permease Regulator
  DQL23_RS04140 (NCTC7865_00827) amiD 871670..872596 (+) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  DQL23_RS04145 (NCTC7865_00828) amiE 872605..873672 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  DQL23_RS04150 (NCTC7865_00829) amiF 873683..874606 (+) 924 WP_060553922.1 ATP-binding cassette domain-containing protein Regulator
  DQL23_RS04155 (NCTC7865_00830) comR/comR2 874805..875287 (+) 483 WP_060553923.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL23_RS04160 (NCTC7865_00830) - 875564..877120 (+) 1557 WP_060553923.1 16S ribosomal RNA -
  DQL23_RS04165 (NCTC7865_00830) - 877175..877247 (+) 73 WP_060553923.1 tRNA-Ala -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34631.59 Da        Isoelectric Point: 9.7223

>NTDB_id=1137482 DQL23_RS04140 WP_045634045.1 871670..872596(+) (amiD) [Streptococcus gordonii strain NCTC7865]
MASIDKNKFQFVKRDDFASEAIDAPAYSYWRSVIRQFLKKKSTIVMLAILLTIILMSFIYPMLSDFDYNDVSKVNDFSAR
YIAPNGKYWFGTDSNGKSLFDGVWFGARNSILISVIATAINLIIGIVVGGIWGISKSVDRVMMEVYNVISNIPQLLIVIV
LTYSIGAGFWNLIFAMTITSWISIAYLIRVQIMRYRDLEYNLASRTLGTSTFKIVARNIMPQLVSVIMTTSSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1137482 DQL23_RS04140 WP_045634045.1 871670..872596(+) (amiD) [Streptococcus gordonii strain NCTC7865]
ATGGCTTCTATTGATAAAAATAAATTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAGCAATTGATGCTCCAGCCTA
TTCATACTGGAGATCTGTTATTCGTCAATTTCTGAAAAAGAAATCTACCATTGTTATGTTGGCGATTTTGCTAACCATTA
TTTTAATGAGTTTTATTTACCCAATGTTGTCTGACTTTGATTATAACGATGTAAGTAAAGTTAATGATTTTAGTGCTCGT
TATATTGCGCCAAATGGAAAATATTGGTTTGGTACAGATAGCAATGGTAAATCTCTCTTTGATGGAGTATGGTTTGGTGC
TCGTAATTCTATCTTGATTTCCGTTATTGCGACAGCCATTAACTTGATCATTGGGATTGTTGTTGGTGGTATTTGGGGGA
TTTCTAAATCTGTTGACCGCGTTATGATGGAAGTTTATAATGTCATCTCAAATATTCCGCAATTATTGATTGTTATTGTC
TTGACTTATTCGATCGGAGCTGGATTCTGGAATCTAATCTTTGCCATGACAATTACTTCATGGATTTCGATTGCTTACTT
AATTCGTGTACAAATCATGCGGTATCGTGATTTAGAGTACAACCTTGCCAGCCGTACTTTGGGAACGTCTACTTTTAAAA
TTGTTGCTCGAAACATTATGCCACAACTGGTATCTGTTATCATGACAACTAGCTCTCAAATGCTGCCAAGCTTTATCTCT
TATGAAGCCTTCCTTTCTTTCTTTGGTTTGGGGCTTCCAGTAACTGTGCCAAGTTTAGGGCGTTTGATTTCTGACTATTC
ACAAAACGTTACAACCAATGCTTACCTTTTCTGGATTCCGTTGACAACCTTGATTTTGGTATCCTTGTCCCTTTTCATCG
TCGGACAAAATTTGGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.468

100

0.825
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment