Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DQL23_RS04150 Genome accession   NZ_LS483341
Coordinates   873683..874606 (+) Length   307 a.a.
NCBI ID   WP_060553922.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 868683..879606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS04135 (NCTC7865_00826) amiC 870174..871670 (+) 1497 WP_045634046.1 ABC transporter permease Regulator
  DQL23_RS04140 (NCTC7865_00827) amiD 871670..872596 (+) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  DQL23_RS04145 (NCTC7865_00828) amiE 872605..873672 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  DQL23_RS04150 (NCTC7865_00829) amiF 873683..874606 (+) 924 WP_060553922.1 ATP-binding cassette domain-containing protein Regulator
  DQL23_RS04155 (NCTC7865_00830) comR/comR2 874805..875287 (+) 483 WP_060553923.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQL23_RS04160 (NCTC7865_00830) - 875564..877120 (+) 1557 WP_060553923.1 16S ribosomal RNA -
  DQL23_RS04165 (NCTC7865_00830) - 877175..877247 (+) 73 WP_060553923.1 tRNA-Ala -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34910.13 Da        Isoelectric Point: 6.7109

>NTDB_id=1137484 DQL23_RS04150 WP_060553922.1 873683..874606(+) (amiF) [Streptococcus gordonii strain NCTC7865]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSKGEIFFDGKQINGKKSRK
ESAEIIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEERIQKVKNIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPDQHDYSVEKPEMVEIKSGHFVWANKTELENYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1137484 DQL23_RS04150 WP_060553922.1 873683..874606(+) (amiF) [Streptococcus gordonii strain NCTC7865]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTTGGTGAAGGGAAGAAGAAATTTGTCGCTGTTAAAAA
TGCAAATTTCTTTATTAATAGAGGTGAAACTTTCTCGCTCGTAGGTGAATCTGGTTCAGGGAAAACTACAATTGGTCGTG
CAATCATTGGTTTGAACGAAACGAGTAAAGGTGAAATCTTCTTTGATGGAAAGCAGATTAATGGGAAGAAGTCTAGAAAA
GAATCTGCGGAGATTATTCGTAAGATTCAAATGATTTTCCAGGATCCTGCGGCAAGCTTAAATGAGCGTGCAACAGTTGA
CTATATCATTTCTGAGGGCTTGTACAACTATCATTTGTTTGAAAATGAAGAAGAAAGAATACAAAAGGTTAAGAATATTA
TTCATGAAGTTGGATTGCTTTCCGAACATTTGACACGTTATCCGCATGAATTTTCAGGAGGGCAACGCCAACGTATTGGG
ATAGCGCGGGCTTTAGTCATGCAACCAGATTTCGTTATTGCTGATGAACCAATTTCTGCTTTGGATGTATCCGTTCGTGC
TCAAGTCCTAAACCTTCTAAAGAAATTCCAAAAAGAGTTGGGGTTGACCTACCTATTCATCGCTCACGATTTGTCAGTGG
TACGCTTCATTTCGGATCGTATCGCAGTAATCTATAAAGGTGTTATTGTTGAAGTTGCTGAAACAGAAGAGCTCTTTAAC
AATCCAATTCATCCTTATACCAAATCGTTATTATCGGCCGTTCCAATTCCAGATCCAATCTTGGAGCGTAAAAAAGTCCT
TAAAGTCTACGATCCAGATCAACATGACTATTCAGTTGAAAAACCTGAAATGGTTGAAATTAAATCTGGCCACTTTGTTT
GGGCTAACAAAACTGAATTAGAGAACTATAAAAAAGAACTCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.275

99.674

0.86
  amiF Streptococcus thermophilus LMD-9

85.948

99.674

0.857
  amiF Streptococcus salivarius strain HSISS4

85.294

99.674

0.85

Multiple sequence alignment