Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQL23_RS04135 Genome accession   NZ_LS483341
Coordinates   870174..871670 (+) Length   498 a.a.
NCBI ID   WP_045634046.1    Uniprot ID   A0AB34SC64
Organism   Streptococcus gordonii strain NCTC7865     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 865174..876670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS04125 (NCTC7865_00824) amiA 865858..867840 (+) 1983 WP_060553920.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04130 (NCTC7865_00825) amiA 868118..870109 (+) 1992 WP_060553921.1 peptide ABC transporter substrate-binding protein Regulator
  DQL23_RS04135 (NCTC7865_00826) amiC 870174..871670 (+) 1497 WP_045634046.1 ABC transporter permease Regulator
  DQL23_RS04140 (NCTC7865_00827) amiD 871670..872596 (+) 927 WP_045634045.1 oligopeptide ABC transporter permease OppC Regulator
  DQL23_RS04145 (NCTC7865_00828) amiE 872605..873672 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  DQL23_RS04150 (NCTC7865_00829) amiF 873683..874606 (+) 924 WP_060553922.1 ATP-binding cassette domain-containing protein Regulator
  DQL23_RS04155 (NCTC7865_00830) comR/comR2 874805..875287 (+) 483 WP_060553923.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55563.59 Da        Isoelectric Point: 9.9197

>NTDB_id=1137481 DQL23_RS04135 WP_045634046.1 870174..871670(+) (amiC) [Streptococcus gordonii strain NCTC7865]
MKKYIFMRILRSLVSIFLVTALTYTIIYTMVPRKLIFKQDPNYNKIATTKDKKANYENTIYERMGYVDYYDTKELQEKAS
KEDSSVTVEGTDANKKIYEAYIKKLGNGWKLHQFEESKQFYAVREVPVLERVLGFYGNLIQFDHTGFVKDETNPKLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNAQFPFVHQNFVTLNLGNSYPTYANIPVLQVISQGQGQTKSAEVQFPTGKKISSV
NIYSRTYKSPSKADSRDIANYGKDDPYTATESNYQYPSMLVSSAIIGLIGIAISYLIAVPLGSYMARFKNTWIDSSLTGL
LTFLLALPTIALVYIIRLGGSSVGLPDSFPVLGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIQGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTGLSVFALLLGD
ILMTMLDPRIKLTTKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1137481 DQL23_RS04135 WP_045634046.1 870174..871670(+) (amiC) [Streptococcus gordonii strain NCTC7865]
ATGAAGAAATATATATTTATGCGTATCTTACGCTCCCTGGTGTCGATTTTCTTAGTAACGGCTTTGACCTATACCATTAT
TTATACTATGGTGCCAAGAAAATTGATTTTTAAACAGGATCCTAACTATAACAAGATAGCAACCACAAAAGATAAAAAAG
CCAATTACGAAAACACAATCTATGAACGTATGGGCTATGTGGATTATTATGATACGAAAGAGTTACAGGAGAAAGCTAGC
AAGGAAGATAGCTCTGTAACTGTTGAAGGAACTGATGCAAACAAAAAAATCTACGAAGCTTATATCAAAAAATTAGGTAA
TGGCTGGAAGCTTCACCAATTTGAAGAAAGCAAGCAGTTTTATGCTGTTCGTGAGGTGCCAGTTCTTGAACGTGTTCTTG
GCTTCTACGGGAATTTGATTCAATTTGACCATACTGGTTTTGTCAAAGATGAAACGAATCCAAAACTTAAACGTTATATT
CGTATTGAAAACGACCCTGCTATTGGTTGGTCTGTAGTTGGATCAGGGACTAAGCATAAATATTTACTATACTTTAATGC
TCAATTTCCGTTTGTTCATCAAAATTTTGTGACCTTGAACTTAGGAAATTCTTACCCAACTTATGCAAATATTCCTGTGT
TACAGGTTATTTCACAAGGCCAAGGACAAACAAAGTCAGCTGAAGTTCAATTCCCTACAGGAAAGAAAATTTCATCAGTT
AATATCTATTCACGAACTTACAAGTCACCAAGTAAAGCTGATTCGCGAGATATTGCAAACTATGGAAAAGATGATCCATA
TACAGCTACAGAGAGCAACTATCAATATCCATCCATGCTTGTTAGCTCAGCGATTATTGGTTTGATTGGTATTGCAATCT
CTTATCTGATTGCTGTCCCATTAGGGTCTTACATGGCTCGCTTCAAAAACACTTGGATTGATAGTTCATTAACAGGTCTC
TTGACCTTCCTTTTGGCCCTGCCAACAATTGCCTTGGTTTATATTATTCGCTTAGGTGGTTCTTCGGTTGGTCTTCCAGA
TTCTTTCCCAGTTCTTGGCGCAGGAGACTGGCGTTCATATGTTCTTCCGGCAGTAATTCTGGGACTTTTGGGTGCGCCAA
GCACAGCTATCTGGATTCGTCGCTATATGATTGACTTGCAATCCCAAGACTTTGTACGTTTTGCTCGTGCTAAAGGATTA
TCTGAAAAAGAAATTTCAAATAAACACATTTTCAAAAATGCCATGGTTCCATTGGTATCAGGAATTCCAGGGGCTGTTAT
TGGAGTTATTCAAGGGGCAACCTTGACAGAGACTGTCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATCGACTCAGTTA
AAGCTTCAAATAACTCTATGGTAGTCGGATTGGTCTTCATTTTCACTGGTTTATCAGTCTTTGCCTTACTCTTAGGTGAT
ATTTTGATGACAATGCTTGACCCACGTATTAAATTAACAACAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

78.916

100

0.789
  amiC Streptococcus thermophilus LMG 18311

78.514

100

0.785
  amiC Streptococcus thermophilus LMD-9

78.313

100

0.783

Multiple sequence alignment