Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DQM36_RS09135 Genome accession   NZ_LS483332
Coordinates   1761087..1762358 (-) Length   423 a.a.
NCBI ID   WP_002992182.1    Uniprot ID   A0A660A3W1
Organism   Streptococcus pyogenes strain NCTC12696     
Function   require for competence (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1751365..1779119 1761087..1762358 within 0


Gene organization within MGE regions


Location: 1751365..1779119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM36_RS09085 (NCTC12696_01789) nrdG 1751365..1751979 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM36_RS09090 (NCTC12696_01790) - 1751979..1752488 (-) 510 WP_002991345.1 GNAT family N-acetyltransferase -
  DQM36_RS09095 (NCTC12696_01791) - 1752497..1753432 (-) 936 WP_002992828.1 Gfo/Idh/MocA family protein -
  DQM36_RS09670 (NCTC12696_01792) - 1753461..1753607 (-) 147 WP_002982210.1 hypothetical protein -
  DQM36_RS09100 (NCTC12696_01793) nrdD 1753789..1755987 (-) 2199 WP_002992831.1 anaerobic ribonucleoside-triphosphate reductase -
  DQM36_RS09105 (NCTC12696_01794) - 1756084..1757643 (-) 1560 WP_002992833.1 membrane protein -
  DQM36_RS09110 (NCTC12696_01796) - 1758056..1758361 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DQM36_RS09115 (NCTC12696_01797) ruvX 1758373..1758792 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  DQM36_RS09120 (NCTC12696_01798) - 1758789..1759058 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DQM36_RS09125 (NCTC12696_01799) spx 1759173..1759571 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DQM36_RS09130 (NCTC12696_01800) recA 1759862..1760998 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  DQM36_RS09135 (NCTC12696_01801) cinA 1761087..1762358 (-) 1272 WP_002992182.1 competence/damage-inducible protein A Machinery gene
  DQM36_RS09140 (NCTC12696_01802) - 1762427..1762987 (-) 561 WP_002992183.1 DNA-3-methyladenine glycosylase I -
  DQM36_RS09145 (NCTC12696_01803) ruvA 1762997..1763593 (-) 597 WP_038432673.1 Holliday junction branch migration protein RuvA -
  DQM36_RS09150 (NCTC12696_01804) - 1763595..1764815 (-) 1221 WP_002992187.1 MDR family MFS transporter -
  DQM36_RS09155 (NCTC12696_01805) mutL 1764826..1766808 (-) 1983 WP_002992189.1 DNA mismatch repair endonuclease MutL -
  DQM36_RS09160 (NCTC12696_01806) - 1766903..1768054 (-) 1152 WP_003058754.1 tyrosine-type recombinase/integrase -
  DQM36_RS09890 - 1768303..1768446 (+) 144 WP_011185066.1 putative holin-like toxin -
  DQM36_RS09170 (NCTC12696_01808) - 1769295..1770062 (-) 768 WP_003058809.1 helix-turn-helix transcriptional regulator -
  DQM36_RS09175 (NCTC12696_01809) - 1770216..1770422 (+) 207 WP_002992503.1 helix-turn-helix transcriptional regulator -
  DQM36_RS09180 (NCTC12696_01810) - 1770456..1770656 (+) 201 WP_002992502.1 helix-turn-helix domain-containing protein -
  DQM36_RS09185 (NCTC12696_01811) - 1770677..1771084 (+) 408 WP_002992501.1 hypothetical protein -
  DQM36_RS09895 (NCTC12696_01812) - 1771097..1771219 (+) 123 WP_011285272.1 hypothetical protein -
  DQM36_RS09190 (NCTC12696_01813) - 1771502..1772023 (+) 522 WP_002992498.1 Rha family transcriptional regulator -
  DQM36_RS09195 (NCTC12696_01814) - 1772268..1772600 (+) 333 WP_002992497.1 hypothetical protein -
  DQM36_RS09200 (NCTC12696_01815) - 1772600..1772791 (+) 192 WP_027968868.1 hypothetical protein -
  DQM36_RS09205 (NCTC12696_01816) - 1772804..1773166 (+) 363 WP_000206026.1 hypothetical protein -
  DQM36_RS09210 (NCTC12696_01817) - 1773163..1773492 (+) 330 WP_000174505.1 hypothetical protein -
  DQM36_RS09215 (NCTC12696_01818) - 1773495..1773767 (+) 273 WP_001100459.1 hypothetical protein -
  DQM36_RS09220 (NCTC12696_01819) - 1773768..1774625 (+) 858 WP_011185073.1 primase alpha helix C-terminal domain-containing protein -
  DQM36_RS09225 (NCTC12696_01820) - 1774594..1776282 (+) 1689 WP_038432681.1 DNA primase family protein -
  DQM36_RS09230 (NCTC12696_01821) - 1776569..1776742 (+) 174 WP_000694577.1 hypothetical protein -
  DQM36_RS09675 - 1776748..1776921 (+) 174 WP_011185075.1 hypothetical protein -
  DQM36_RS09235 (NCTC12696_01822) - 1776923..1777432 (+) 510 WP_011185076.1 hypothetical protein -
  DQM36_RS09240 (NCTC12696_01823) - 1777507..1777995 (+) 489 WP_002992480.1 hypothetical protein -
  DQM36_RS09250 (NCTC12696_01824) - 1778399..1778761 (+) 363 WP_002992136.1 DUF1492 domain-containing protein -
  DQM36_RS09255 (NCTC12696_01825) - 1778736..1779119 (+) 384 WP_011185077.1 ArpU family phage packaging/lysis transcriptional regulator -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45933.64 Da        Isoelectric Point: 4.7648

>NTDB_id=1136995 DQM36_RS09135 WP_002992182.1 1761087..1762358(-) (cinA) [Streptococcus pyogenes strain NCTC12696]
MKAELIAVGTEILTGQIVNTNAQFLSEKMAELGIDVYFQTAVGDNEERLLSVITTASQRSDLVILCGGLGPTKDDLTKQT
LAKYLRRDLVYDEQACQKLDDFFAKRKPSSRTPNNERQAQVIEGSIPLPNKTGLAVGGFITVDGISYVVLPGPPSELKPI
VNEELVPLLSKQYSTLYSKVLRFFGIGESQLVTVLSDFIENQTDPTIAPYAKTGEVTLRLSTKTENQALADKKLGQLEAQ
LLSRKTLEGQPLADVFYGYGEDNSLARETFELLVKYDKSITAAESLTAGLFQSTLASFPGASQVFNGGFVTYSMEEKAKM
LGLPLEELKSHGVVSAYTAEGMAEQARLLTGADIGVSLTGVAGPDMLEEQPAGTVFIGLATQNKVESIKVLISGRSRLDV
CYIATLHAFNMVRKTLLKLENLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1136995 DQM36_RS09135 WP_002992182.1 1761087..1762358(-) (cinA) [Streptococcus pyogenes strain NCTC12696]
ATGAAAGCTGAACTGATTGCAGTAGGTACCGAAATTTTGACTGGTCAAATTGTGAATACCAATGCTCAATTTCTGTCGGA
AAAAATGGCAGAGCTAGGTATTGATGTCTATTTTCAAACGGCTGTTGGGGACAACGAGGAGCGTTTACTTTCAGTGATTA
CAACTGCTAGTCAGCGGAGTGATTTGGTCATTTTATGCGGTGGCCTTGGTCCAACGAAAGATGATTTAACCAAACAAACT
TTAGCAAAGTACCTTAGGAGAGACTTGGTTTATGATGAGCAAGCTTGTCAGAAACTAGATGACTTTTTTGCTAAGCGCAA
GCCTTCATCACGGACACCAAATAATGAGCGACAGGCACAAGTGATTGAAGGATCAATCCCTTTGCCAAATAAAACTGGTC
TTGCGGTTGGTGGGTTCATTACAGTCGATGGTATTAGTTATGTTGTCTTACCGGGTCCTCCAAGTGAATTGAAGCCGATA
GTAAATGAAGAATTGGTACCACTTCTGTCAAAACAATACAGTACATTGTATTCAAAGGTACTACGCTTTTTTGGTATTGG
GGAAAGTCAGTTGGTAACAGTCTTGTCAGATTTTATTGAGAATCAAACTGATCCAACCATTGCTCCGTATGCTAAGACTG
GCGAAGTGACTCTTCGCTTATCAACAAAAACTGAAAACCAAGCTCTGGCAGATAAAAAGTTAGGTCAGCTAGAAGCGCAG
CTACTATCCCGAAAAACTCTTGAAGGTCAACCCTTAGCTGATGTCTTTTATGGCTATGGGGAGGATAATTCCTTAGCGCG
TGAGACATTTGAGCTCTTAGTAAAATATGATAAGTCAATTACAGCAGCAGAAAGTCTAACCGCGGGATTATTTCAGTCAA
CTTTGGCGAGTTTTCCAGGAGCTTCTCAAGTATTCAATGGAGGCTTTGTGACTTATAGCATGGAAGAAAAAGCGAAAATG
CTAGGCCTTCCTTTAGAGGAGTTGAAATCGCATGGCGTTGTTAGTGCTTATACGGCCGAGGGGATGGCGGAGCAAGCAAG
GTTATTGACTGGTGCTGATATTGGGGTAAGTTTAACAGGTGTTGCCGGACCAGATATGTTGGAGGAACAGCCTGCAGGTA
CAGTTTTCATTGGTCTTGCCACTCAAAATAAGGTAGAATCAATAAAGGTTTTGATTAGCGGGCGAAGTCGTTTGGATGTG
TGCTATATCGCTACTTTACATGCCTTTAATATGGTCCGTAAAACTTTATTAAAACTTGAGAATTTGCTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Competence-damaged protein (CinA)

(263-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A660A3W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

69.267

100

0.693
  cinA Streptococcus mitis SK321

69.065

98.582

0.681
  cinA Streptococcus mitis NCTC 12261

68.585

98.582

0.676
  cinA Streptococcus pneumoniae TIGR4

67.626

98.582

0.667
  cinA Streptococcus pneumoniae Rx1

67.626

98.582

0.667
  cinA Streptococcus pneumoniae R6

67.626

98.582

0.667
  cinA Streptococcus pneumoniae D39

67.386

98.582

0.664
  cinA Streptococcus suis isolate S10

52.644

98.345

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

46.172

98.818

0.456

Multiple sequence alignment