Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   DQL11_RS00660 Genome accession   NZ_LS483315
Coordinates   101642..102580 (+) Length   312 a.a.
NCBI ID   WP_009880361.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12059     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 96642..107580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL11_RS00650 (NCTC12059_00131) rpoC 97391..101032 (+) 3642 WP_111704482.1 DNA-directed RNA polymerase subunit beta' -
  DQL11_RS00655 (NCTC12059_00132) - 101184..101549 (+) 366 WP_002986560.1 DUF1033 family protein -
  DQL11_RS00660 (NCTC12059_00133) comYA 101642..102580 (+) 939 WP_009880361.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL11_RS00665 (NCTC12059_00134) comYB 102516..103550 (+) 1035 WP_231871968.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL11_RS00670 (NCTC12059_00135) comYC 103552..103878 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL11_RS00675 (NCTC12059_00136) comGD 103853..104281 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  DQL11_RS00680 (NCTC12059_00137) comGE 104238..104522 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE -
  DQL11_RS00685 (NCTC12059_00138) comYF 104515..104949 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL11_RS00690 (NCTC12059_00139) comGG 104933..105259 (+) 327 WP_111704484.1 competence type IV pilus minor pilin ComGG -
  DQL11_RS00695 (NCTC12059_00140) - 105408..106541 (+) 1134 WP_111704485.1 ISAs1-like element IS1548 family transposase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35017.21 Da        Isoelectric Point: 8.2452

>NTDB_id=1136040 DQL11_RS00660 WP_009880361.1 101642..102580(+) (comYA) [Streptococcus pyogenes strain NCTC12059]
MVQALAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLVSHFKFVAGMIVGEKRRCQVGSCDYK
LSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISNYHQEA
QVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHQPDILVIGEIRDSQTARAVIRASLTGAMVFSTVHAKSISGV
YARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1136040 DQL11_RS00660 WP_009880361.1 101642..102580(+) (comYA) [Streptococcus pyogenes strain NCTC12059]
ATGGTACAAGCATTAGCAAAAGCTATTCTAGCAAAAGCTGAACAGGTTCAGGCACAAGATATTTATATTTTGCCAAGAGC
AGATCAATATGATCTTTTTTTACGAATAGGAGATGAAAGGAGATTAGTTGATGTTTATCAGAGCGATCGGATGGCTCCTC
TTGTTAGTCACTTTAAATTCGTTGCAGGAATGATAGTTGGTGAAAAGAGACGTTGTCAGGTGGGTTCATGTGATTATAAG
CTCAGTAAAGATAAGCAGTTATCTTTGCGCTTATCTAGCGTGGGTGATTATCGCGGGCAAGAAAGCTTAGTGATTCGTCT
GCTTCATCATCAAAATAAAAGTGTACATTATTGGTTTGATGGATTGACAAAAGTAGCCAATCAGGTTGGCGGTAGAGGGT
TGTATTTATTTGCAGGACCAGTTGGGTCTGGGAAGACAACCTTGATGTACCAGCTGATTTCGAATTATCATCAAGAAGCA
CAGGTTATTAGTATAGAAGATCCTGTAGAAATTAAAAATCACCAGATTTTACAATTACAAGTGAATGATGATATTGGTAT
GACTTATGACAATTTGATCAAACTGTCTTTACGCCATCAACCAGATATTTTAGTTATTGGTGAGATTCGAGATAGTCAAA
CAGCAAGAGCCGTTATTAGGGCTAGTCTAACAGGTGCCATGGTTTTTTCAACGGTTCACGCTAAAAGTATCTCGGGTGTT
TATGCAAGATTGTTAGAACTTGGTGTAACGAAAGCAGAACTGTCTAATTGCTTAGCATTAATTGCTTACCAAAGGTTACT
TAATGGAGGAGCATTGATTGACTCTACTCAAAACGAATTTGAATATTATTCCTCATCGAATTGGAATCAACAAATTGATC
AGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

61.093

99.679

0.609
  comYA Streptococcus mutans UA140

61.093

99.679

0.609
  comYA Streptococcus gordonii str. Challis substr. CH1

60.129

99.679

0.599
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

60

99.359

0.596
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

58.199

99.679

0.58
  comGA/cglA/cilD Streptococcus pneumoniae D39

58.199

99.679

0.58
  comGA/cglA/cilD Streptococcus pneumoniae R6

58.199

99.679

0.58
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

58.199

99.679

0.58
  comGA Lactococcus lactis subsp. cremoris KW2

50.161

99.679

0.5
  comGA Latilactobacillus sakei subsp. sakei 23K

39.31

92.949

0.365

Multiple sequence alignment