Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLWA7_RS17200 Genome accession   NZ_LR962646
Coordinates   3973471..3974730 (+) Length   419 a.a.
NCBI ID   WP_053051318.1    Uniprot ID   A0A7U7D8L3
Organism   Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1483     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3968831..3988090 3973471..3974730 within 0


Gene organization within MGE regions


Location: 3968831..3988090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLWA7_RS17180 (X12_003413) - 3968831..3970357 (-) 1527 WP_053051304.1 hypothetical protein -
  ACLWA7_RS17185 (X12_003414) - 3970327..3970896 (-) 570 WP_231103946.1 hypothetical protein -
  ACLWA7_RS17190 (X12_003415) - 3970967..3972556 (-) 1590 WP_053051306.1 phosphoethanolamine transferase -
  ACLWA7_RS17195 (X12_003416) pilA 3972692..3973117 (-) 426 WP_053051307.1 pilin Machinery gene
  ACLWA7_RS17200 (X12_003417) pilC 3973471..3974730 (+) 1260 WP_053051318.1 type II secretion system F family protein Machinery gene
  ACLWA7_RS17205 (X12_003418) - 3974737..3975600 (+) 864 WP_016849610.1 prepilin peptidase -
  ACLWA7_RS17210 (X12_003419) coaE 3975614..3976237 (+) 624 WP_053051308.1 dephospho-CoA kinase -
  ACLWA7_RS17215 (X12_003420) - 3976247..3976485 (+) 239 Protein_3363 SymE family type I addiction module toxin -
  ACLWA7_RS17220 (X12_003421) - 3976589..3977923 (-) 1335 WP_016904089.1 sensor histidine kinase -
  ACLWA7_RS17225 (X12_003422) - 3977916..3978593 (-) 678 WP_006448355.1 response regulator transcription factor -
  ACLWA7_RS17230 (X12_003423) - 3978621..3979098 (-) 478 Protein_3366 hypothetical protein -
  ACLWA7_RS17235 (X12_003424) rimK 3979289..3980194 (-) 906 WP_166767257.1 30S ribosomal protein S6--L-glutamate ligase -
  ACLWA7_RS17240 (X12_003425) glgX 3980685..3982817 (+) 2133 WP_053051310.1 glycogen debranching protein GlgX -
  ACLWA7_RS17245 (X12_003426) - 3983489..3983881 (-) 393 WP_023904915.1 H-NS family nucleoid-associated regulatory protein -
  ACLWA7_RS17250 (X12_003427) - 3983970..3984356 (-) 387 WP_026064907.1 hypothetical protein -
  ACLWA7_RS17255 (X12_003428) - 3984931..3985443 (-) 513 WP_049805061.1 ImmA/IrrE family metallo-endopeptidase -
  ACLWA7_RS17260 (X12_003429) - 3985428..3985634 (-) 207 WP_374057769.1 ImmA/IrrE family metallo-endopeptidase -
  ACLWA7_RS17265 (X12_003430) - 3986178..3986738 (+) 561 WP_102596783.1 hypothetical protein -
  ACLWA7_RS17270 (X12_003431) - 3986810..3988090 (+) 1281 WP_080591431.1 retropepsin-like aspartic protease -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46099.61 Da        Isoelectric Point: 10.3006

>NTDB_id=1134890 ACLWA7_RS17200 WP_053051318.1 3973471..3974730(+) (pilC) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1483]
MSVARSVIKKQPVDRNTSMLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMRKMIGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLVVTVGSIVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1134890 ACLWA7_RS17200 WP_053051318.1 3973471..3974730(+) (pilC) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 1483]
ATGTCAGTCGCGCGTAGCGTCATCAAGAAGCAACCGGTCGACCGGAACACCAGCATGCTGCAGACCTTCGTTTGGGAAGG
AGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAACATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCCCTGTTTGGAGCGGCGGGGAAGAAAATTACCCCAAAAGAC
ATTGCGTTCTTTAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAGAAAAATGATCGGCCAGATCAGGACAGACATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGATACGGTCGCCACCTACAAAGAAAACATTGAAGCCCTAAAGGGCAAGATCAAAAAGGCACTGTTCTACCC
TGCCATGGTGGTTGCGGTAGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAAGAAGTATTCA
AAAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGGTGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTCGA
TCGATTAATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAAGCAGGCGTTCCTCTAGTGGAGGCACTTGGGATCGTCGCTGGCGCTACTGGCAATAAGCTTTATGAGGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGCAAGAAGTCAACAACGCCGTAGACGCGCTCAGTAGCCTGCTCGAGCCACTGATCATGGTATTCATCGGCACTATTGTG
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.202

96.897

0.516
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Acinetobacter baylyi ADP1

51.111

96.659

0.494
  pilC Acinetobacter baumannii D1279779

50.864

96.659

0.492
  pilG Neisseria gonorrhoeae MS11

43.86

95.227

0.418
  pilG Neisseria meningitidis 44/76-A

43.25

95.465

0.413
  pilC Vibrio cholerae strain A1552

40.5

95.465

0.387
  pilC Vibrio campbellii strain DS40M4

38.75

95.465

0.37

Multiple sequence alignment