Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLWA5_RS06745 Genome accession   NZ_LR877307
Coordinates   1569480..1570739 (-) Length   419 a.a.
NCBI ID   WP_039525808.1    Uniprot ID   -
Organism   Xanthomonas arboricola isolate Xanthomonas sp. CPBF 237     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1555230..1580317 1569480..1570739 within 0


Gene organization within MGE regions


Location: 1555230..1580317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLWA5_RS06670 (X12_001327) - 1555230..1555592 (-) 363 WP_016904888.1 hypothetical protein -
  ACLWA5_RS06675 (X12_001328) - 1556082..1557362 (-) 1281 WP_080591431.1 retropepsin-like aspartic protease -
  ACLWA5_RS06680 (X12_001329) - 1557434..1557994 (-) 561 WP_102596783.1 hypothetical protein -
  ACLWA5_RS06685 (X12_001330) - 1558538..1558744 (+) 207 WP_374057769.1 ImmA/IrrE family metallo-endopeptidase -
  ACLWA5_RS06690 (X12_001331) - 1558729..1559241 (+) 513 WP_049805061.1 ImmA/IrrE family metallo-endopeptidase -
  ACLWA5_RS06695 (X12_001332) - 1559816..1560202 (+) 387 WP_026064907.1 hypothetical protein -
  ACLWA5_RS06700 (X12_001333) - 1560291..1560683 (+) 393 WP_023904915.1 H-NS family nucleoid-associated regulatory protein -
  ACLWA5_RS06705 (X12_001334) glgX 1561355..1563487 (-) 2133 WP_349812720.1 glycogen debranching protein GlgX -
  ACLWA5_RS06710 (X12_001335) rimK 1563977..1564882 (+) 906 WP_166767257.1 30S ribosomal protein S6--L-glutamate ligase -
  ACLWA5_RS06715 (X12_001336) - 1565109..1565579 (+) 471 WP_039525800.1 hypothetical protein -
  ACLWA5_RS06720 (X12_001337) - 1565611..1566288 (+) 678 WP_006448355.1 response regulator transcription factor -
  ACLWA5_RS06725 (X12_001338) - 1566281..1567615 (+) 1335 WP_016904089.1 sensor histidine kinase -
  ACLWA5_RS06730 (X12_001339) - 1567718..1567963 (-) 246 WP_374057770.1 SymE family type I addiction module toxin -
  ACLWA5_RS06735 (X12_001340) coaE 1567973..1568596 (-) 624 WP_039525803.1 dephospho-CoA kinase -
  ACLWA5_RS06740 (X12_001341) - 1568610..1569473 (-) 864 WP_016849610.1 prepilin peptidase -
  ACLWA5_RS06745 (X12_001342) pilC 1569480..1570739 (-) 1260 WP_039525808.1 type II secretion system F family protein Machinery gene
  ACLWA5_RS06750 - 1571084..1571491 (+) 408 WP_039529754.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACLWA5_RS06755 (X12_001344) pilB 1571793..1573517 (+) 1725 WP_039525810.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLWA5_RS06760 (X12_001345) pilR 1573731..1575125 (-) 1395 WP_053045681.1 sigma-54-dependent transcriptional regulator Regulator
  ACLWA5_RS06765 (X12_001346) - 1575318..1576931 (-) 1614 WP_349812721.1 sensor histidine kinase -
  ACLWA5_RS06770 (X12_001347) sucC 1577163..1578332 (+) 1170 WP_039519379.1 ADP-forming succinate--CoA ligase subunit beta -
  ACLWA5_RS06775 (X12_001348) sucD 1578357..1579232 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ACLWA5_RS06780 (X12_001349) - 1579309..1579746 (-) 438 WP_180973917.1 hypothetical protein -
  ACLWA5_RS06785 (X12_001350) - 1579925..1580317 (+) 393 WP_026064065.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45985.24 Da        Isoelectric Point: 10.3065

>NTDB_id=1132570 ACLWA5_RS06745 WP_039525808.1 1569480..1570739(-) (pilC) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 237]
MSVARNAVKNQPVSRNTSLQQPFVWEGTDKRGVKMKGEQTARNANMLRAELRRQGITPTVVKAKPKPLFGSAGKRISSKD
IAFFSRQMATMMKSGIPIVSSLEIIGEGHKNPRMKQMVGQIRSDIEGGSSLQEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQIIVNASRFMVAYWWL
LLLITGGSIFGFIFAYKRSPRMQHGMDRLILKFPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDVMLFKVAEYFEQEVNNAVDALSSLMEPLIMVFLGTVV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1132570 ACLWA5_RS06745 WP_039525808.1 1569480..1570739(-) (pilC) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 237]
ATGTCAGTTGCCCGTAATGCCGTTAAAAATCAGCCGGTGAGCAGGAACACATCGCTGCAGCAGCCGTTCGTGTGGGAAGG
CACGGACAAGCGCGGCGTCAAGATGAAAGGGGAGCAGACCGCACGCAACGCCAACATGCTGCGTGCCGAGCTTCGTCGGC
AAGGCATCACACCTACTGTCGTAAAGGCCAAGCCGAAGCCACTGTTCGGTTCGGCAGGCAAGCGGATCAGCTCCAAGGAT
ATTGCGTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCCGGCATCCCCATCGTGAGCTCTTTGGAAATCATTGGCGA
AGGCCACAAGAATCCGCGAATGAAACAGATGGTCGGCCAAATTCGCAGCGACATAGAGGGTGGATCTTCACTTCAGGAAG
CCATTAGCAAGCACCCAGTTCAATTTGACGAGCTTTATAGGAATCTGGTTCGCGCGGGCGAAGGCGCGGGCGTGCTAGAG
ACGGTGCTAGATACAGTCGCAACATACAAGGAAAATATTGAGGCCCTTAAGGGCAAGATTAAGAAAGCGCTTTTTTATCC
AGCAATGGTTGTTGCCGTGGCAATCATCGTCAGCGCAATTCTATTAATCTTCGTGGTCCCCCAGTTTGAGGAGGTTTTCA
AGAGCTTTGGCGCAGAATTGCCAGCATTCACGCAGATTATCGTAAACGCATCGCGATTCATGGTTGCCTATTGGTGGCTA
CTGCTTCTCATCACTGGGGGATCAATTTTTGGCTTTATTTTTGCCTACAAGCGCTCGCCACGCATGCAGCATGGGATGGA
CAGGCTGATCCTGAAATTTCCGATCATTGGCCAGATCATGCATAACAGCTCGATCGCCAGATTTGCCCGTACCACCGCGG
TGACATTTAAGGCTGGCGTGCCGCTGGTCGAGGCGCTGGGCATTGTGGCAGGCGCAACGGGCAATAAGGTCTACGAAGAA
GCCGTATTGCGAATGCGCGATGACGTCTCCGTCGGCTACCCGGTCAACATGGCCATGAAACAGGTCAACCTGTTCCCTCA
TATGGTAGTGCAGATGACGGCGATTGGCGAAGAGGCGGGTGCCCTAGATGTCATGCTGTTCAAAGTCGCGGAATATTTCG
AGCAAGAGGTCAACAATGCTGTAGATGCCTTGAGCAGCTTGATGGAACCGTTGATCATGGTTTTTCTCGGGACCGTCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Acinetobacter baylyi ADP1

51.724

96.897

0.501
  pilC Legionella pneumophila strain ERS1305867

51.478

96.897

0.499
  pilC Acinetobacter baumannii D1279779

50.37

96.659

0.487
  pilG Neisseria gonorrhoeae MS11

44.552

98.568

0.439
  pilG Neisseria meningitidis 44/76-A

44.068

98.568

0.434
  pilC Vibrio cholerae strain A1552

42.821

94.749

0.406
  pilC Vibrio campbellii strain DS40M4

39.454

96.181

0.379
  pilC Thermus thermophilus HB27

38

95.465

0.363

Multiple sequence alignment