Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLQ0O_RS15935 Genome accession   NZ_LR877303
Coordinates   3682839..3684098 (+) Length   419 a.a.
NCBI ID   WP_411758332.1    Uniprot ID   -
Organism   Xanthomonas arboricola isolate Xanthomonas sp. CPBF 122     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3677839..3689098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ0O_RS15920 (X12_003168) pilR 3678293..3679687 (+) 1395 WP_047127086.1 sigma-54-dependent transcriptional regulator Regulator
  ACLQ0O_RS15925 (X12_003169) pilB 3680139..3681872 (-) 1734 WP_047130424.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLQ0O_RS15930 (X12_003170) - 3682057..3682461 (-) 405 WP_047129199.1 pilin -
  ACLQ0O_RS15935 (X12_003171) pilC 3682839..3684098 (+) 1260 WP_411758332.1 type II secretion system F family protein Machinery gene
  ACLQ0O_RS15940 (X12_003172) - 3684105..3684968 (+) 864 WP_016849610.1 prepilin peptidase -
  ACLQ0O_RS15945 (X12_003173) coaE 3684982..3685605 (+) 624 WP_047130421.1 dephospho-CoA kinase -
  ACLQ0O_RS15950 (X12_003174) - 3685615..3685860 (+) 246 WP_386045282.1 SymE family type I addiction module toxin -
  ACLQ0O_RS15955 (X12_003175) - 3685964..3687298 (-) 1335 WP_016904089.1 sensor histidine kinase -
  ACLQ0O_RS15960 (X12_003176) - 3687291..3687968 (-) 678 WP_006448355.1 response regulator transcription factor -
  ACLQ0O_RS15965 (X12_003177) - 3688000..3688470 (-) 471 WP_411758333.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45767.07 Da        Isoelectric Point: 10.3152

>NTDB_id=1132542 ACLQ0O_RS15935 WP_411758332.1 3682839..3684098(+) (pilC) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 122]
MSAIRSAIKKEAVSRSIDQQLQFIWEGKDKRGVKMKGEQTSKSANLLRAELRRQGITPTVVKVKPKPLFGAAGKTVTPKD
IAFFSRQMATMMKSGVPIVGALEIIGSGHKNPRMRNMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKAMFYPAMVMAVALIVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVNASRFMVAWWWL
LLIALVGSITGFIFAYKRSPAMQHGMDRLILKAPVLGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPIIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1132542 ACLQ0O_RS15935 WP_411758332.1 3682839..3684098(+) (pilC) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 122]
ATGTCAGCAATACGTAGCGCAATCAAGAAAGAGGCCGTGTCCCGCTCAATCGACCAGCAGTTGCAATTCATCTGGGAGGG
TAAGGACAAGCGCGGCGTCAAGATGAAGGGGGAACAGACCTCCAAGAGTGCTAACTTGCTGCGCGCAGAATTGCGTCGCC
AAGGCATCACGCCAACGGTAGTGAAAGTCAAACCCAAGCCGTTATTCGGCGCGGCGGGCAAGACGGTCACACCTAAAGAT
ATCGCTTTTTTCAGCCGTCAAATGGCGACGATGATGAAGTCAGGCGTCCCAATTGTGGGTGCCCTCGAAATTATTGGCAG
TGGCCACAAGAACCCCCGTATGCGGAACATGGTTGGGCAGATCCGCACGGATATTGAGGGGGGCTCCTCGTTGCATGAAG
CAATTAGCAAGCATCCCGTGCAATTTGACGAGCTCTACCGAAATCTCGTCCGTGCAGGCGAAGGCGCGGGCGTACTTGAG
ACCGTTCTTGATACGGTGGCGAATTACAAAGAAAACATCGAAGCACTTAAGGGCAAGATCAAAAAAGCGATGTTTTACCC
GGCGATGGTGATGGCCGTCGCACTGATTGTCAGCTCCATCCTCCTTGTCTGGGTGGTACCCCAATTTGAAGACGTTTTCA
AAGGTTTTGGCGCGGAGCTTCCTGCATTTACACAGATGATTGTCAACGCTTCGCGATTCATGGTTGCGTGGTGGTGGCTC
CTTTTGATTGCATTAGTAGGAAGTATCACTGGCTTTATATTCGCTTATAAACGCTCGCCTGCTATGCAACACGGCATGGA
CCGCCTGATCTTGAAGGCCCCCGTCCTAGGCCAAATAATGCATAACAGCTCGATAGCCCGATTTGCCCGTACGACGGCGG
TGACATTCAAGGCTGGCGTGCCCTTGGTAGAGGCGCTGAGCATCGTTGCAGGTGCGACAGGCAATTCGGTCTATGAGAAG
GCTGTGTTACGTATGCGCGATGACGTTTCAGTCGGCTATCCAGTCAACGTGGCAATGAAACAGGTCAATCTGTTCCCGCA
TATGGTTGTACAGATGACTTCAATCGGTGAGGAGGCCGGCGCATTGGATGCGATGCTATTCAAGGTAGCCGAATACTTCG
AACAAGAAGTCAACAATGCTGTCGATGCATTGAGCAGCTTGCTAGAACCCATCATCATGGTATTCATTGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Legionella pneumophila strain ERS1305867

52.01

94.988

0.494
  pilC Acinetobacter baumannii D1279779

51.637

94.749

0.489
  pilC Acinetobacter baylyi ADP1

51.134

94.749

0.484
  pilG Neisseria gonorrhoeae MS11

43.284

95.943

0.415
  pilG Neisseria meningitidis 44/76-A

42.786

95.943

0.411
  pilC Vibrio cholerae strain A1552

41.457

94.988

0.394
  pilC Vibrio campbellii strain DS40M4

38.916

96.897

0.377

Multiple sequence alignment