Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ACLQ0O_RS15925 Genome accession   NZ_LR877303
Coordinates   3680139..3681872 (-) Length   577 a.a.
NCBI ID   WP_047130424.1    Uniprot ID   -
Organism   Xanthomonas arboricola isolate Xanthomonas sp. CPBF 122     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3675139..3686872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ0O_RS15915 (X12_003167) - 3676487..3678100 (+) 1614 WP_039525813.1 sensor histidine kinase -
  ACLQ0O_RS15920 (X12_003168) pilR 3678293..3679687 (+) 1395 WP_047127086.1 sigma-54-dependent transcriptional regulator Regulator
  ACLQ0O_RS15925 (X12_003169) pilB 3680139..3681872 (-) 1734 WP_047130424.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLQ0O_RS15930 (X12_003170) - 3682057..3682461 (-) 405 WP_047129199.1 pilin -
  ACLQ0O_RS15935 (X12_003171) pilC 3682839..3684098 (+) 1260 WP_411758332.1 type II secretion system F family protein Machinery gene
  ACLQ0O_RS15940 (X12_003172) - 3684105..3684968 (+) 864 WP_016849610.1 prepilin peptidase -
  ACLQ0O_RS15945 (X12_003173) coaE 3684982..3685605 (+) 624 WP_047130421.1 dephospho-CoA kinase -
  ACLQ0O_RS15950 (X12_003174) - 3685615..3685860 (+) 246 WP_386045282.1 SymE family type I addiction module toxin -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62606.81 Da        Isoelectric Point: 5.6006

>NTDB_id=1132541 ACLQ0O_RS15925 WP_047130424.1 3680139..3681872(-) (pilB) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 122]
MNVVIANLVGITGIARRLVQDGALDESAARLAMDQASAAKVPLPQWFAEKKLVTASQLAAANAVEFGMPLMDVSVFDANQ
NAVKLVSEELLQKYQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNASLGSSLGD
DDEGMGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPV
KLSQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIEKLGYEADQQKL
FLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPD
IIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLPE
HALLAEGFTPAQIAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGVIVLEGGNAMQIAEAAQSIGIRDLRQSALVK
AAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=1132541 ACLQ0O_RS15925 WP_047130424.1 3680139..3681872(-) (pilB) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 122]
ATGAACGTAGTCATTGCCAATCTGGTCGGCATTACCGGCATTGCTCGTCGGCTTGTCCAAGACGGGGCTTTAGATGAGTC
AGCGGCAAGGCTGGCGATGGATCAGGCTAGCGCTGCCAAGGTGCCTCTGCCCCAATGGTTTGCTGAGAAAAAATTGGTAA
CCGCGTCTCAACTTGCCGCCGCTAACGCGGTCGAATTCGGTATGCCACTGATGGACGTGTCGGTCTTCGACGCCAATCAG
AACGCGGTCAAACTGGTCAGTGAGGAGTTGCTCCAGAAGTACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTTGTT
CGTGGGGGTGAGCAACCCGACCCAGACCAGGGCGCTGGACGACATCAAGTTTCATACCAATTTGGTGGTCGAGCCGATCC
TGGTTGACGAGGACCAGATCCGTCGTACCTTGGAGCAGTGGCAGGCCAGCAACGCATCGTTGGGCTCGTCGCTCGGGGAC
GATGATGAGGGGATGGGCGACCTGGACGTGTCGGCCGGGGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGATGC
CAAGGGCGACGACACGCCGGTAGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCCTCCGACATCC
ATTTCGAGCCCTATGAAGACGACTACCGGGTGCGGCTGCGGATCGATGGGCTGCTGAAGAACGTGGCCAAGGCGCCGGTG
AAGTTGAGCCAGCGTATCGCGGCACGCCTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGAGTGCCCCAGGACGG
GCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGTGTGAGCACCTTGCCGACATTGTTCGGCGAAAAGG
TAGTGTTGCGTATCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGAGAAGCTAGGCTACGAGGCGGACCAGCAGAAGCTG
TTCCTGGAGGCGATCCACAAGCCCTACGGCATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGCTGTA
CACGGCACTGGGCATCCTCAACGACGAGACGCGCAACATCTCCACCGCCGAGGACCCGGTGGAAATCCGGTTGCCCGGCG
TCAATCAGGTGCAGCAGAACAACAAGCGGGGGATGACCTTCGCCGCCGCGCTACGCTCGTTCCTGCGCCAGGACCCGGAC
ATCATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATTGCGATCAAGGCCGCGCAGACCGGTCACATGGTGCT
GTCCACGCTGCACACCAACGATGCGCCGCAGACCATCGCGCGTTTGATGAACATGGGCATCGCGCCTTACAACATTACTT
CGTCGGTGACCTTGGTGATCGCGCAGCGTCTGGCGCGGCGCCTGTGCAACAACTGCAAGCGCAAATCGACCTTGCCCGAG
CATGCGTTGCTGGCCGAAGGCTTCACGCCTGCGCAGATCGCTGCAGGGATCGAGCTGTATGAGGCGGTCGGTTGCGACGA
GTGCACCGAAGGCTACAAGGGCCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAGATCGGCGTGATCGTGCTGG
AAGGCGGCAATGCGATGCAGATCGCCGAGGCGGCACAGAGTATCGGCATCCGCGACCTGCGCCAGTCGGCGTTGGTCAAG
GCCGCGCACGGGGTAACCAGCCTGGCCGAGATCAACCGGGTGACGAAGGACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(200-467)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(48-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.458

98.44

0.546
  pilB Acinetobacter baylyi ADP1

55.282

98.44

0.544
  pilB Legionella pneumophila strain ERS1305867

52.548

98.614

0.518
  pilB Vibrio cholerae strain A1552

48.966

100

0.492
  pilF Neisseria gonorrhoeae MS11

48.768

98.44

0.48
  pilB Vibrio parahaemolyticus RIMD 2210633

46.964

97.054

0.456
  pilB Vibrio campbellii strain DS40M4

46.046

98.614

0.454
  pilB/pilB1 Synechocystis sp. PCC 6803

36.125

100

0.381
  pilF Thermus thermophilus HB27

40.192

90.121

0.362

Multiple sequence alignment