Detailed information NTG1132540

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACLQ0O_RS15920
• Genome accession: NZ_LR877303
• Coordinates: 3678293..3679687 (+)
• Length: 464 a.a.
• NCBI ID: WP_047127086.1
• Uniprot ID: A0A7U7HJH5
• Organism: Xanthomonas arboricola isolate Xanthomonas sp. CPBF 122
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3673293..3684687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLQ0O_RS15905 (X12_003165)	sucD	3674186..3675061 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
ACLQ0O_RS15910 (X12_003166)	sucC	3675086..3676255 (-)	1170	WP_039519379.1	ADP-forming succinate--CoA ligase subunit beta	-
ACLQ0O_RS15915 (X12_003167)	-	3676487..3678100 (+)	1614	WP_039525813.1	sensor histidine kinase	-
ACLQ0O_RS15920 (X12_003168)	pilR	3678293..3679687 (+)	1395	WP_047127086.1	sigma-54-dependent transcriptional regulator	Regulator
ACLQ0O_RS15925 (X12_003169)	pilB	3680139..3681872 (-)	1734	WP_047130424.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACLQ0O_RS15930 (X12_003170)	-	3682057..3682461 (-)	405	WP_047129199.1	pilin	-
ACLQ0O_RS15935 (X12_003171)	pilC	3682839..3684098 (+)	1260	WP_411758332.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50190.57 Da
• Isoelectric Point: 6.5112

>NTDB_id=1132540 ACLQ0O_RS15920 WP_047127086.1 3678293..3679687(+) (pilR) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 122]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=1132540 ACLQ0O_RS15920 WP_047127086.1 3678293..3679687(+) (pilR) [Xanthomonas arboricola isolate Xanthomonas sp. CPBF 122]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACTGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAATAACCGCGACCGCCCTGCCCCGCCACCGCCAC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCATGAACAAGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACTGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTACCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACCCCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGAGCGT
TGCGTTATAAATTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	99.784	0.629
pilR	Acinetobacter baumannii strain A118	49.138	100	0.491