Detailed information NTG1131429

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: H1W89_RS08710
• Genome accession: NZ_LR822029
• Coordinates: 1672544..1672972 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_1035
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1667544..1677972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W89_RS08670 (STHERMO_1931)	-	1667681..1668124 (-)	444	WP_180474624.1	CAAX protease	-
H1W89_RS10050 (STHERMO_1932)	-	1668198..1668536 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
H1W89_RS10055 (STHERMO_1933)	-	1668580..1668855 (-)	276	WP_011681681.1	hypothetical protein	-
H1W89_RS08680 (STHERMO_1934)	-	1668867..1669064 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
H1W89_RS08685 (STHERMO_1935)	-	1669313..1670506 (-)	1194	WP_014608740.1	acetate kinase	-
H1W89_RS08690 (STHERMO_1936)	comYH	1670562..1671518 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
H1W89_RS08695 (STHERMO_1937)	comGG	1671563..1671880 (-)	318	WP_180474625.1	competence type IV pilus minor pilin ComGG	-
H1W89_RS08700 (STHERMO_1938)	comYF	1671858..1672295 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1W89_RS08705 (STHERMO_1939)	comGE	1672279..1672572 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
H1W89_RS08710 (STHERMO_1940)	comYD	1672544..1672972 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
H1W89_RS08715 (STHERMO_1941)	comYC	1672932..1673258 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
H1W89_RS08720 (STHERMO_1942)	comYB	1673255..1674355 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1W89_RS08725 (STHERMO_1943)	comGA/cglA/cilD	1674237..1675178 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
H1W89_RS08730 (STHERMO_1944)	-	1675259..1675621 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=1131429 H1W89_RS08710 WP_011226626.1 1672544..1672972(-) (comYD) [Streptococcus thermophilus isolate STH_CIRM_1035]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=1131429 H1W89_RS08710 WP_011226626.1 1672544..1672972(-) (comYD) [Streptococcus thermophilus isolate STH_CIRM_1035]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38