Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H1W89_RS08690 Genome accession   NZ_LR822029
Coordinates   1670562..1671518 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus isolate STH_CIRM_1035     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1665562..1676518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W89_RS08660 (STHERMO_1929) proC 1666122..1666892 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  H1W89_RS08665 (STHERMO_1930) - 1666922..1667584 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  H1W89_RS08670 (STHERMO_1931) - 1667681..1668124 (-) 444 WP_180474624.1 CAAX protease -
  H1W89_RS10050 (STHERMO_1932) - 1668198..1668536 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  H1W89_RS10055 (STHERMO_1933) - 1668580..1668855 (-) 276 WP_011681681.1 hypothetical protein -
  H1W89_RS08680 (STHERMO_1934) - 1668867..1669064 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  H1W89_RS08685 (STHERMO_1935) - 1669313..1670506 (-) 1194 WP_014608740.1 acetate kinase -
  H1W89_RS08690 (STHERMO_1936) comYH 1670562..1671518 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  H1W89_RS08695 (STHERMO_1937) comGG 1671563..1671880 (-) 318 WP_180474625.1 competence type IV pilus minor pilin ComGG -
  H1W89_RS08700 (STHERMO_1938) comYF 1671858..1672295 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1W89_RS08705 (STHERMO_1939) comGE 1672279..1672572 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  H1W89_RS08710 (STHERMO_1940) comYD 1672544..1672972 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  H1W89_RS08715 (STHERMO_1941) comYC 1672932..1673258 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H1W89_RS08720 (STHERMO_1942) comYB 1673255..1674355 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1W89_RS08725 (STHERMO_1943) comGA/cglA/cilD 1674237..1675178 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  H1W89_RS08730 (STHERMO_1944) - 1675259..1675621 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=1131427 H1W89_RS08690 WP_011226622.1 1670562..1671518(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1035]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1131427 H1W89_RS08690 WP_011226622.1 1670562..1671518(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1035]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment