Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L1X59_RS02805 Genome accession   NZ_LR813086
Coordinates   574410..575633 (-) Length   407 a.a.
NCBI ID   WP_234687620.1    Uniprot ID   A0AA35D7K7
Organism   Comamonas aquatica isolate BB1454     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 569410..580633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1X59_RS02775 (TML_00543) - 570311..571243 (+) 933 WP_234688388.1 ATP-binding protein -
  L1X59_RS02780 (TML_00544) - 571263..571736 (+) 474 WP_234687617.1 NUDIX domain-containing protein -
  L1X59_RS02785 (TML_00545) - 571839..572048 (-) 210 WP_234687618.1 DNA gyrase inhibitor YacG -
  L1X59_RS02790 (TML_00546) zapD 572076..572831 (-) 756 WP_210930172.1 cell division protein ZapD -
  L1X59_RS02795 (TML_00547) coaE 572926..573534 (-) 609 WP_234687619.1 dephospho-CoA kinase -
  L1X59_RS02800 (TML_00548) - 573537..574410 (-) 874 Protein_538 prepilin peptidase -
  L1X59_RS02805 (TML_00549) pilC 574410..575633 (-) 1224 WP_234687620.1 type II secretion system F family protein Machinery gene
  L1X59_RS02810 (TML_00550) pilB 575685..577430 (-) 1746 WP_234687621.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L1X59_RS02815 (TML_00551) - 577589..578518 (-) 930 WP_234688389.1 polyprenyl synthetase family protein -
  L1X59_RS02820 (TML_00552) rplU 578729..579040 (+) 312 WP_042417032.1 50S ribosomal protein L21 -
  L1X59_RS02825 (TML_00553) rpmA 579059..579319 (+) 261 WP_042416998.1 50S ribosomal protein L27 -
  L1X59_RS02830 (TML_00554) cgtA 579483..580556 (+) 1074 WP_234687622.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44585.72 Da        Isoelectric Point: 9.5471

>NTDB_id=1130402 L1X59_RS02805 WP_234687620.1 574410..575633(-) (pilC) [Comamonas aquatica isolate BB1454]
MATAAPGRSNAKEFIYEWAGKDRQGKALHGEMRAVGEAQVQASLRRQGIFITKLKKRSMRAGKKIKPKDIALFTRQMATM
MKAGVPLLQSFDIVGRGNPNPSVTKLLNDIRQDVETGTSLSMAFRKHPMHFNALYCNLIEAGEAAGILDTLMDRLATYME
KTEAIKGKIKSALMYPIAVIVVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMAISEFFVAYWWLIFGVIGGGLYF
FIQAWRRSPKMQRVMDRLLLKLPIFGILIDKSCIARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYREATDKIQQMVAT
GTNLTDAMTSADVFPSMVLQMCAIGEESGSIDHMLGKAADFYEQEVDEMVAGLSSLMEPIIIVILGGIIGGIVVSMYLPI
FKLGQVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1130402 L1X59_RS02805 WP_234687620.1 574410..575633(-) (pilC) [Comamonas aquatica isolate BB1454]
ATGGCAACCGCAGCACCTGGCAGGAGCAACGCAAAGGAGTTCATTTACGAATGGGCCGGCAAAGACCGCCAGGGCAAGGC
ACTGCACGGAGAGATGCGGGCCGTTGGGGAAGCCCAGGTCCAGGCCTCCTTGCGCCGCCAGGGCATATTCATCACCAAGC
TGAAGAAGCGCAGCATGCGCGCCGGCAAGAAGATCAAGCCCAAGGACATTGCGCTGTTCACCCGCCAGATGGCCACCATG
ATGAAGGCCGGGGTCCCGCTGCTGCAATCGTTCGACATCGTCGGGCGTGGCAACCCCAATCCCAGCGTGACCAAGCTGCT
CAACGACATCCGCCAGGATGTGGAGACCGGCACCTCGCTGAGCATGGCATTCCGCAAGCACCCCATGCACTTCAACGCCT
TGTACTGCAACCTGATCGAGGCCGGGGAAGCCGCGGGCATCCTGGATACCTTGATGGACCGCCTGGCCACCTACATGGAA
AAGACCGAGGCCATCAAGGGCAAGATCAAGTCGGCACTGATGTACCCGATCGCGGTGATCGTGGTGGCGTTCGTGGTGGT
GACGGTGATCATGATCTTTGTGATCCCGGCGTTCAAGGAAGTCTTCACCTCGTTCGGCGCCGACCTGCCGGCCCCGACGC
TGCTGGTCATGGCCATCAGTGAGTTCTTTGTCGCATATTGGTGGCTGATCTTTGGCGTGATCGGTGGCGGCCTGTATTTC
TTCATACAGGCCTGGCGACGCAGTCCCAAGATGCAGCGCGTGATGGACCGGCTGCTACTGAAGCTGCCCATTTTTGGCAT
CCTGATCGACAAATCCTGCATCGCCCGCTGGACACGCACCCTCTCCACCATGTTCGCCGCGGGCGTGCCCCTGGTGGAAG
CGCTGGACTCCGTGGGCGGCGCCTCGGGCAACAGCGTCTACCGGGAAGCCACCGACAAGATCCAGCAGATGGTCGCCACC
GGCACCAACCTGACCGATGCCATGACGAGTGCCGATGTCTTCCCGTCGATGGTGCTGCAGATGTGCGCCATCGGCGAGGA
ATCGGGCTCCATCGATCACATGCTGGGCAAGGCGGCGGACTTCTACGAACAGGAAGTGGACGAGATGGTGGCAGGCCTTT
CCAGCCTGATGGAGCCCATCATCATCGTGATCCTGGGTGGCATCATCGGCGGGATTGTGGTGTCCATGTACCTGCCGATC
TTCAAATTAGGACAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.637

98.034

0.536
  pilG Neisseria gonorrhoeae MS11

51.263

97.297

0.499
  pilG Neisseria meningitidis 44/76-A

51.01

97.297

0.496
  pilC Legionella pneumophila strain ERS1305867

50.758

97.297

0.494
  pilC Acinetobacter baylyi ADP1

49.497

97.789

0.484
  pilC Acinetobacter baumannii D1279779

48.872

98.034

0.479
  pilC Vibrio campbellii strain DS40M4

40.048

100

0.41
  pilC Vibrio cholerae strain A1552

41.562

97.543

0.405
  pilC Thermus thermophilus HB27

38.849

100

0.398

Multiple sequence alignment