Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NSCAC_RS00490 Genome accession   NZ_LR778175
Coordinates   89249..90463 (-) Length   404 a.a.
NCBI ID   WP_197744505.1    Uniprot ID   A0A7G1Q7E6
Organism   Candidatus Nitrosacidococcus tergens isolate NSCAC1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 84249..95463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSCAC_RS00455 (NSCAC_0094) nadA 84959..86053 (+) 1095 WP_197745204.1 quinolinate synthase NadA -
  NSCAC_RS00460 (NSCAC_0095) - 86074..86319 (+) 246 WP_197744500.1 zinc-finger domain-containing protein -
  NSCAC_RS00465 (NSCAC_0096) - 86330..86530 (-) 201 WP_197745206.1 DUF2905 domain-containing protein -
  NSCAC_RS00470 (NSCAC_0097) - 86564..87526 (+) 963 WP_197744501.1 Nudix family hydrolase -
  NSCAC_RS00475 (NSCAC_0098) yacG 87529..87735 (-) 207 WP_197744502.1 DNA gyrase inhibitor YacG -
  NSCAC_RS00480 (NSCAC_0099) coaE 87742..88395 (-) 654 WP_197744503.1 dephospho-CoA kinase -
  NSCAC_RS00485 (NSCAC_0100) pilD 88352..89221 (-) 870 WP_197744504.1 A24 family peptidase Machinery gene
  NSCAC_RS00490 (NSCAC_0101) pilC 89249..90463 (-) 1215 WP_197744505.1 type II secretion system F family protein Machinery gene
  NSCAC_RS00495 (NSCAC_0102) pilB 90471..92180 (-) 1710 WP_269474122.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NSCAC_RS00500 lptM 92300..92434 (+) 135 WP_197744506.1 LPS translocon maturation chaperone LptM -
  NSCAC_RS00505 (NSCAC_0103) lysA 92443..93693 (+) 1251 WP_197744507.1 diaminopimelate decarboxylase -
  NSCAC_RS00510 (NSCAC_0104) - 93715..94383 (+) 669 WP_197744508.1 O-methyltransferase -
  NSCAC_RS00515 (NSCAC_0105) dapF 94390..95232 (+) 843 WP_197744509.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44869.95 Da        Isoelectric Point: 10.0991

>NTDB_id=1130234 NSCAC_RS00490 WP_197744505.1 89249..90463(-) (pilC) [Candidatus Nitrosacidococcus tergens isolate NSCAC1]
MAETKNSTFIWEGNNRQGQTIKGEIEGKNISLIKANLRRQGITSLKIKKKPAPLFSFSKNKISPKEIALFSRQVATMMSA
GIPMIQSFDLIGRSHENEAMKRLAKKIRKEVEDGSTFAEALQKYPKHFDNLFCNLVHAGEQSGTLETLLDKIATYKERTE
SVKGKIKKALFYPLAIMVVAFIITAILLIFVIPKFKDLFTGFGADLPAITLFVMNLSEFFKTWWWAIFSGIGVTIYGLIT
AKKRSKSIEYFSDKMMLKIPIIGSALNKAIISRYARTLSTMFTAGVPLVEALKSVANASGNMMYTEGILKIRDEVSTGSR
LYVAMRDSNLFPDMVVQMVSIGEEAGSISQMLTKIADTYEEEVNNTVDSLSSLMEPVIMAILGVIIGGLVIAMYLPIFKM
GSVI

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=1130234 NSCAC_RS00490 WP_197744505.1 89249..90463(-) (pilC) [Candidatus Nitrosacidococcus tergens isolate NSCAC1]
ATGGCTGAAACAAAAAATAGTACTTTTATTTGGGAAGGAAATAATCGCCAGGGTCAAACAATAAAAGGAGAAATAGAAGG
TAAAAATATTAGTTTAATCAAAGCTAATTTACGCCGCCAAGGGATTACATCTCTTAAAATCAAAAAAAAACCTGCTCCTC
TTTTTAGTTTTTCCAAGAATAAAATTTCTCCAAAAGAAATTGCTCTATTTAGTCGTCAAGTAGCTACCATGATGTCTGCA
GGTATTCCTATGATTCAGTCCTTCGATTTAATTGGGCGTAGTCATGAAAATGAGGCAATGAAAAGGCTTGCAAAAAAAAT
AAGAAAAGAAGTAGAAGATGGTAGTACATTTGCCGAAGCATTACAAAAATATCCGAAACACTTTGATAATCTATTTTGTA
ATTTAGTTCATGCTGGAGAACAATCAGGTACTCTAGAAACCCTACTAGATAAAATTGCAACTTATAAAGAGAGAACAGAA
TCGGTTAAAGGAAAAATAAAAAAAGCCCTATTTTACCCTCTTGCTATTATGGTAGTTGCTTTTATCATTACTGCAATTTT
GCTTATTTTTGTTATTCCTAAATTTAAAGATCTATTTACGGGTTTTGGCGCAGATTTACCTGCAATTACTTTATTTGTCA
TGAATCTTTCTGAATTTTTTAAAACATGGTGGTGGGCAATTTTCTCCGGGATAGGAGTTACTATCTATGGCCTAATCACT
GCGAAAAAACGTTCTAAGAGTATAGAGTATTTTTCCGATAAAATGATGCTTAAAATACCAATTATTGGCTCAGCATTGAA
TAAAGCTATTATTTCTAGGTACGCTCGTACCCTTTCTACCATGTTTACCGCTGGTGTTCCTCTGGTTGAGGCACTAAAAT
CTGTGGCAAATGCTTCAGGTAATATGATGTATACCGAAGGAATTTTAAAAATTCGAGATGAAGTATCCACTGGTAGTCGC
TTATATGTAGCAATGCGCGATAGCAATCTTTTCCCTGATATGGTTGTGCAAATGGTATCTATTGGTGAAGAAGCAGGATC
TATCAGCCAAATGCTTACGAAAATAGCAGATACTTATGAAGAGGAAGTCAATAATACGGTAGATAGTTTAAGTAGTCTTA
TGGAACCTGTAATTATGGCTATACTTGGGGTGATTATTGGTGGTTTAGTTATTGCCATGTATCTTCCTATCTTTAAAATG
GGATCTGTCATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G1Q7E6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54

99.01

0.535
  pilC Legionella pneumophila strain ERS1305867

52.97

100

0.53
  pilC Acinetobacter baumannii D1279779

53.015

98.515

0.522
  pilC Acinetobacter baylyi ADP1

52.141

98.267

0.512
  pilG Neisseria gonorrhoeae MS11

42.145

99.257

0.418
  pilG Neisseria meningitidis 44/76-A

42.145

99.257

0.418
  pilC Vibrio campbellii strain DS40M4

39.798

98.267

0.391
  pilC Vibrio cholerae strain A1552

38.889

98.02

0.381

Multiple sequence alignment