Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AACL56_RS23140 Genome accession   NZ_LR743507
Coordinates   4897341..4898570 (+) Length   409 a.a.
NCBI ID   WP_339092132.1    Uniprot ID   A0A679JPH7
Organism   Variovorax paradoxus isolate vvax     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4892341..4903570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACL56_RS23110 (VVAX_04611) cgtA 4892420..4893496 (-) 1077 WP_339092128.1 Obg family GTPase CgtA -
  AACL56_RS23115 (VVAX_04612) rpmA 4893568..4893828 (-) 261 WP_081267930.1 50S ribosomal protein L27 -
  AACL56_RS23120 (VVAX_04613) rplU 4893841..4894152 (-) 312 WP_057592097.1 50S ribosomal protein L21 -
  AACL56_RS23125 (VVAX_04614) - 4894344..4895336 (+) 993 WP_339092130.1 polyprenyl synthetase family protein -
  AACL56_RS23135 (VVAX_04617) pilB 4895580..4897313 (+) 1734 WP_339092131.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AACL56_RS23140 (VVAX_04618) pilC 4897341..4898570 (+) 1230 WP_339092132.1 type II secretion system F family protein Machinery gene
  AACL56_RS23145 (VVAX_04619) - 4898570..4899535 (+) 966 WP_339092133.1 A24 family peptidase -
  AACL56_RS23150 (VVAX_04620) coaE 4899544..4900152 (+) 609 WP_339092929.1 dephospho-CoA kinase -
  AACL56_RS23155 (VVAX_04621) - 4900222..4901715 (+) 1494 WP_339092134.1 MBOAT family protein -
  AACL56_RS23160 (VVAX_04622) - 4901877..4902911 (+) 1035 WP_339092135.1 hypothetical protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44731.28 Da        Isoelectric Point: 9.7612

>NTDB_id=1129796 AACL56_RS23140 WP_339092132.1 4897341..4898570(+) (pilC) [Variovorax paradoxus isolate vvax]
MATVASNRSRPTHKEFVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRTRSGKAIKPKDIAIFTRQLA
TMMKAGVPLMQSFDIVGRGNANASVAKLLNDIRTDVETGTSLSAAFRKYPKYFDNLYCNLVEAGEAAGILEDLLDRLATY
MEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMGMSEFFVSYWWLIFGGIGGGV
YFFLQAWKRNERFQRVMDRVLLRIPIFGSLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTAAMTNANLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1129796 AACL56_RS23140 WP_339092132.1 4897341..4898570(+) (pilC) [Variovorax paradoxus isolate vvax]
ATGGCAACAGTGGCATCCAACCGCTCGCGGCCCACGCACAAGGAGTTTGTCTTCGAGTGGGAGGGCAAGGACCGTAACGG
CAAGCTCGTGCGCGGCGAGCTTCGCGCCGCCGGCGAGAACCAGGTGCAGGCCGCCCTACGCCGCCAGGGCGTGCTGGCCT
CGAAGATCAAGAAGCGCCGCACGCGCTCCGGCAAGGCGATCAAACCCAAGGACATCGCCATCTTCACGCGCCAACTCGCG
ACGATGATGAAGGCCGGCGTGCCTTTGATGCAGTCCTTCGATATCGTCGGGCGCGGCAATGCGAATGCAAGCGTGGCGAA
GTTGCTCAACGACATACGTACCGATGTGGAAACCGGCACTTCACTGTCAGCCGCTTTCCGAAAGTACCCGAAGTACTTCG
ACAACCTCTACTGCAACTTGGTGGAAGCGGGTGAAGCGGCCGGTATCCTGGAAGATCTGCTGGACCGTCTTGCCACGTAC
ATGGAGAAGACCGAAGCGATCAAATCGAAAATCAAGTCGGCCCTCATGTACCCCACGTCCGTCGTTGTCGTGGCGTTCGT
GGTGGTGGCCATCATCATGATCTTCGTGATCCCGGCATTCAAGCAGGTATTCACCTCGTTCGGCGCCGACCTGCCGGCGC
CGACCCTGTTCGTGATGGGAATGAGCGAATTCTTCGTCTCCTACTGGTGGCTCATCTTCGGTGGGATCGGCGGCGGCGTC
TATTTCTTCCTTCAAGCCTGGAAGCGCAATGAACGCTTCCAGCGAGTGATGGATCGCGTCCTGCTGCGAATCCCGATTTT
CGGATCGCTGATCGAAAAGTCCTGCGTTGCGCGCTGGACTCGCACGCTCGCCACCATGTTCGCTGCGGGCGTGCCGCTGG
TCGAAGCCCTCGATTCGGTGGGTGGCGCTTCGGGCAACACCGTCTACGGCGACGCCACTGCGAAGATCCAGCAGGAGGTC
TCCACGGGCACCAGCCTCACCGCGGCAATGACAAATGCCAATCTCTTCCCATCGATGGTGATCCAGATGACCGCCATCGG
CGAGGAGTCGGGCTCGATCGACCACATGCTGGGAAAGGCGGCCGATTTCTACGAGTCCGAAGTCGACGACATGGTCGCTG
GCTTGTCGAGCCTGATGGAACCCATCATCATCGTCTTCCTGGGCACCATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCCATCTTCAAGCTCGGCCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679JPH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.885

97.555

0.526
  pilG Neisseria gonorrhoeae MS11

52.897

97.066

0.513
  pilG Neisseria meningitidis 44/76-A

52.645

97.066

0.511
  pilC Acinetobacter baylyi ADP1

52.01

97.311

0.506
  pilC Legionella pneumophila strain ERS1305867

50.505

96.822

0.489
  pilC Acinetobacter baumannii D1279779

49.874

97.066

0.484
  pilC Vibrio cholerae strain A1552

41.206

97.311

0.401
  pilC Vibrio campbellii strain DS40M4

40.25

97.8

0.394
  pilC Thermus thermophilus HB27

37.709

100

0.386

Multiple sequence alignment