Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QOY30_RS15970 Genome accession   NZ_LR699166
Coordinates   3345941..3347158 (+) Length   405 a.a.
NCBI ID   WP_283745613.1    Uniprot ID   -
Organism   Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3340941..3352158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOY30_RS15955 (SIDCL21_3355) lgt 3342676..3343464 (+) 789 WP_283745610.1 prolipoprotein diacylglyceryl transferase -
  QOY30_RS15960 (SIDCL21_3356) - 3343569..3344456 (+) 888 WP_283745611.1 phospholipase A -
  QOY30_RS15965 (SIDCL21_3357) - 3344531..3345817 (+) 1287 WP_283745612.1 CNNM domain-containing protein -
  QOY30_RS15970 (SIDCL21_3358) pilC 3345941..3347158 (+) 1218 WP_283745613.1 type II secretion system F family protein Machinery gene
  QOY30_RS15975 (SIDCL21_3359) pilD 3347221..3348081 (+) 861 WP_283745614.1 A24 family peptidase Machinery gene
  QOY30_RS15980 (SIDCL21_3360) coaE 3348078..3348689 (+) 612 WP_283745615.1 dephospho-CoA kinase -
  QOY30_RS15985 (SIDCL21_3361) zapD 3348750..3349508 (+) 759 WP_283745616.1 cell division protein ZapD -
  QOY30_RS15990 (SIDCL21_3362) yacG 3349505..3349690 (+) 186 WP_283745617.1 DNA gyrase inhibitor YacG -
  QOY30_RS15995 (SIDCL21_3363) - 3349678..3350628 (-) 951 WP_283745618.1 Nudix family hydrolase -
  QOY30_RS16000 (SIDCL21_3364) - 3350728..3351582 (-) 855 WP_283745619.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44005.71 Da        Isoelectric Point: 9.5926

>NTDB_id=1129328 QOY30_RS15970 WP_283745613.1 3345941..3347158(+) (pilC) [Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21]
MAVDKSAKTKEIQYSWEGKDKAGKIVKGDIRGAGEASVSAHLRRQGITVTKIKKSASGRGKVTEKDITLFTRQLATMLKS
GVPLLQAFDIVGKGHDNPAVSRLLFDIKTDVETGSSLEQSFRKFPLYFDDLYCNLLGAGEAAGILDSLLDRLATYKEKIL
AIKSKIKSALFYPISIIVIAFVITAVIMIFVIPAFKQLFSSFGADLPGPTLVVMAISDFFVAWWWAIFAIIGGSVYGFFY
AWKRNKTMQRRMDQLMLKIPVLGPIVRKASIARWSRTLATMFAAGVPLVEAFDSVAGAAGNVVYYDATKAIQREVTSGTS
LTVAMQNTDVFPSMVLQMVAIGEESGALDSMLSKVADFFEAEVDDAVEALSSLMEPVIMVVLGTLIGGLVIAMYLPIFKM
GQAVG

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1129328 QOY30_RS15970 WP_283745613.1 3345941..3347158(+) (pilC) [Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21]
ATGGCTGTCGACAAGTCTGCAAAAACCAAAGAAATTCAATATAGCTGGGAAGGCAAGGATAAAGCCGGCAAGATAGTCAA
AGGCGACATTCGCGGTGCCGGCGAAGCCAGTGTATCCGCGCACTTGCGCCGCCAAGGCATCACCGTCACCAAAATCAAAA
AAAGTGCATCGGGCAGGGGCAAAGTCACGGAAAAAGATATCACTCTTTTTACCCGGCAACTCGCCACCATGCTGAAATCC
GGAGTACCGCTGCTCCAAGCCTTTGACATCGTCGGCAAAGGTCATGACAACCCCGCAGTTTCGCGCTTGCTGTTCGACAT
CAAGACCGATGTGGAGACCGGAAGCAGCCTGGAACAATCTTTCCGCAAGTTCCCGCTGTATTTCGACGACCTGTATTGCA
ATCTGCTCGGGGCGGGCGAAGCTGCGGGTATTCTGGACAGCCTGCTGGATCGTCTGGCAACCTATAAGGAAAAGATTCTT
GCCATCAAGAGCAAGATAAAATCCGCGTTGTTCTACCCGATCTCCATCATTGTCATCGCCTTTGTCATTACCGCTGTCAT
CATGATCTTCGTGATCCCGGCGTTCAAACAGTTATTTTCCAGCTTCGGTGCCGATTTGCCCGGCCCCACTCTGGTGGTCA
TGGCCATTTCCGATTTCTTCGTGGCATGGTGGTGGGCGATTTTCGCCATCATCGGGGGCAGTGTGTACGGTTTCTTTTAC
GCCTGGAAGCGCAACAAGACCATGCAACGACGCATGGATCAACTGATGCTAAAAATCCCCGTTCTCGGACCTATTGTACG
TAAAGCCTCCATCGCGCGCTGGTCTCGCACCCTGGCCACCATGTTCGCGGCAGGCGTTCCACTGGTGGAAGCCTTCGATT
CAGTGGCGGGCGCTGCCGGTAATGTTGTTTATTACGATGCGACCAAGGCCATTCAGCGCGAAGTGACTTCGGGTACCAGC
CTGACCGTCGCCATGCAGAATACCGATGTTTTTCCCAGCATGGTATTGCAAATGGTCGCCATCGGCGAAGAGTCCGGCGC
GCTGGATAGCATGTTGAGTAAGGTTGCCGACTTTTTTGAAGCCGAAGTGGACGATGCGGTGGAAGCTCTATCGAGCCTGA
TGGAGCCGGTAATTATGGTGGTGTTGGGTACGCTCATCGGCGGCTTGGTGATCGCGATGTACCTGCCGATCTTCAAAATG
GGTCAGGCCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.271

98.272

0.533
  pilC Pseudomonas stutzeri DSM 10701

53.418

97.531

0.521
  pilG Neisseria gonorrhoeae MS11

50.376

98.519

0.496
  pilG Neisseria meningitidis 44/76-A

49.624

98.519

0.489
  pilC Acinetobacter baumannii D1279779

49.622

98.025

0.486
  pilC Acinetobacter baylyi ADP1

48.866

98.025

0.479
  pilC Vibrio cholerae strain A1552

40.704

98.272

0.4
  pilC Vibrio campbellii strain DS40M4

39.066

100

0.393
  pilC Thermus thermophilus HB27

38.346

98.519

0.378

Multiple sequence alignment