Detailed information NTG1129329

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QOY30_RS15975
• Genome accession: NZ_LR699166
• Coordinates: 3347221..3348081 (+)
• Length: 286 a.a.
• NCBI ID: WP_283745614.1
• Uniprot ID: -
• Organism: Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3342221..3353081

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOY30_RS15955 (SIDCL21_3355)	lgt	3342676..3343464 (+)	789	WP_283745610.1	prolipoprotein diacylglyceryl transferase	-
QOY30_RS15960 (SIDCL21_3356)	-	3343569..3344456 (+)	888	WP_283745611.1	phospholipase A	-
QOY30_RS15965 (SIDCL21_3357)	-	3344531..3345817 (+)	1287	WP_283745612.1	CNNM domain-containing protein	-
QOY30_RS15970 (SIDCL21_3358)	pilC	3345941..3347158 (+)	1218	WP_283745613.1	type II secretion system F family protein	Machinery gene
QOY30_RS15975 (SIDCL21_3359)	pilD	3347221..3348081 (+)	861	WP_283745614.1	A24 family peptidase	Machinery gene
QOY30_RS15980 (SIDCL21_3360)	coaE	3348078..3348689 (+)	612	WP_283745615.1	dephospho-CoA kinase	-
QOY30_RS15985 (SIDCL21_3361)	zapD	3348750..3349508 (+)	759	WP_283745616.1	cell division protein ZapD	-
QOY30_RS15990 (SIDCL21_3362)	yacG	3349505..3349690 (+)	186	WP_283745617.1	DNA gyrase inhibitor YacG	-
QOY30_RS15995 (SIDCL21_3363)	-	3349678..3350628 (-)	951	WP_283745618.1	Nudix family hydrolase	-
QOY30_RS16000 (SIDCL21_3364)	-	3350728..3351582 (-)	855	WP_283745619.1	ATP-binding protein	-
QOY30_RS16005 (SIDCL21_3365)	argJ	3351620..3352837 (-)	1218	WP_283745620.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 30875.75 Da
• Isoelectric Point: 8.2261

>NTDB_id=1129329 QOY30_RS15975 WP_283745614.1 3347221..3348081(+) (pilD) [Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21]
MLLLLQTSPLIFSLFAGIIGLVVGSFLNVVIHRLPKMMEREWHKQCAELSGKAPEDSPKYNLLVPRSACPLCGHAITAAE
NIPVLSYLFQRGKCTGCGAAISPRYPLVEATSCILSAYAAWNFGFGFAGLAAIVFIWALIALAFIDFDTQLLPDDITLPL
LWLGLLLNLNGTFTSLPNAVIGAMVGYLSLWSVYWAFKLTTGKEGMGFGDFKLLAAIGAWLGWTLLPLVILLSSLVGAVV
GISLIIFTKRGRNIPIPFGPYLAGGGLIALFWGQTLTQNYLQLLAP

Nucleotide

• Length: 861 bp

>NTDB_id=1129329 QOY30_RS15975 WP_283745614.1 3347221..3348081(+) (pilD) [Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21]
ATGCTGCTTCTGTTGCAAACCTCCCCCCTGATTTTTTCCCTATTCGCCGGAATTATCGGGCTGGTTGTCGGTAGTTTTCT
CAATGTCGTCATCCATCGCCTGCCCAAAATGATGGAACGCGAATGGCATAAACAATGCGCAGAACTCAGCGGCAAAGCGC
CGGAAGACTCCCCCAAATACAATCTGTTGGTGCCGCGATCCGCCTGTCCGCTTTGCGGCCACGCCATTACCGCCGCAGAG
AACATTCCCGTACTCAGCTATCTCTTTCAGCGCGGCAAATGCACCGGATGCGGAGCTGCAATATCTCCGCGCTATCCCCT
GGTAGAGGCTACCAGCTGCATACTGAGTGCGTATGCTGCTTGGAATTTCGGCTTCGGATTCGCCGGACTTGCCGCGATTG
TATTCATTTGGGCGCTGATTGCGCTTGCTTTCATCGACTTTGATACCCAGCTGCTGCCGGACGACATCACCCTACCATTG
CTCTGGCTGGGTCTGCTGCTCAATCTCAACGGGACATTTACTTCCTTACCGAATGCGGTCATCGGCGCCATGGTTGGCTA
TCTTTCGTTGTGGAGCGTGTACTGGGCATTCAAACTGACCACCGGCAAGGAAGGTATGGGCTTTGGCGATTTCAAATTGC
TCGCCGCCATCGGTGCATGGTTGGGCTGGACCTTACTGCCGCTGGTCATCCTGCTGTCCTCGCTGGTCGGAGCCGTGGTC
GGCATCTCACTCATCATTTTCACCAAGCGCGGCCGGAATATCCCGATCCCCTTTGGTCCCTATCTGGCAGGAGGAGGTTT
GATTGCCCTGTTTTGGGGACAAACGCTGACACAGAATTATCTGCAACTTCTGGCGCCGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (133-242)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.152	96.853	0.524
pilD	Vibrio campbellii strain DS40M4	52.669	98.252	0.517
pilD	Acinetobacter baumannii D1279779	48.889	94.406	0.462
pilD	Acinetobacter nosocomialis M2	48.519	94.406	0.458
pilD	Neisseria gonorrhoeae MS11	48.438	89.51	0.434