Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   FQT45_RS00705 Genome accession   NZ_LR595858
Coordinates   113273..114214 (+) Length   313 a.a.
NCBI ID   WP_077323560.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 108273..119214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS00695 (NCTC10228_00143) - 111076..112602 (-) 1527 WP_143880457.1 IS1182 family transposase -
  FQT45_RS00700 (NCTC10228_00144) - 112826..113191 (+) 366 WP_077323559.1 DUF1033 family protein -
  FQT45_RS00705 (NCTC10228_00145) comYA 113273..114214 (+) 942 WP_077323560.1 competence type IV pilus ATPase ComGA Machinery gene
  FQT45_RS00710 (NCTC10228_00146) comYB 114126..115181 (+) 1056 WP_370737006.1 competence type IV pilus assembly protein ComGB Machinery gene
  FQT45_RS00715 (NCTC10228_00147) comGD 115181..115609 (+) 429 WP_223837016.1 competence type IV pilus minor pilin ComGD -
  FQT45_RS00720 (NCTC10228_00148) comGE 115581..115874 (+) 294 WP_172604963.1 competence type IV pilus minor pilin ComGE -
  FQT45_RS00725 (NCTC10228_00149) comGF 115834..116295 (+) 462 WP_077323562.1 competence type IV pilus minor pilin ComGF -
  FQT45_RS00730 (NCTC10228_00150) comGG 116273..116674 (+) 402 WP_077323563.1 competence type IV pilus minor pilin ComGG -
  FQT45_RS00735 (NCTC10228_00151) comYH 116719..117675 (+) 957 WP_077323564.1 class I SAM-dependent methyltransferase Machinery gene
  FQT45_RS00740 (NCTC10228_00152) - 117731..118924 (+) 1194 WP_007895376.1 acetate kinase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35449.98 Da        Isoelectric Point: 9.0618

>NTDB_id=1128462 FQT45_RS00705 WP_077323560.1 113273..114214(+) (comYA) [Streptococcus pseudoporcinus strain NCTC10228]
MIQKIGQALVSQAVNLKAQDIYIIPYEKQYKVFMRIGDERRLIDQYEMKQMASLISHFKFVAGMNVGEKRRCQLGACDYK
GSLSESVPLRLSSVGDFRGFESLVIRLLTTVNKPLNYWFSTDQKVEKVISGRGLYLFSGPVGSGKTSLMYQLLTRIAKNK
QVITIEDPVEIQEASLLQIQVNESIGMTYDNLIKLSLRHRPDYLIIGEIRDAETAKAVIRASLTGAVVFSTIHAKSIPGV
YKRLLELGIKREEIQHTLKFIAYQRLIAGGGLIDFAIETFETHSNQNWNQNLDHLLEQGYITQEQALSEKISD

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1128462 FQT45_RS00705 WP_077323560.1 113273..114214(+) (comYA) [Streptococcus pseudoporcinus strain NCTC10228]
ATGATACAAAAAATAGGTCAAGCATTAGTTAGTCAGGCGGTTAATCTGAAGGCGCAAGATATTTACATAATCCCTTATGA
AAAGCAGTATAAAGTCTTCATGAGAATTGGAGATGAGAGGCGATTGATTGACCAATATGAAATGAAGCAGATGGCAAGTC
TTATTAGCCATTTTAAGTTTGTAGCAGGTATGAACGTAGGAGAAAAGAGACGCTGTCAATTGGGAGCCTGTGACTACAAA
GGAAGCTTATCAGAATCAGTTCCGTTACGTTTATCTTCTGTGGGAGATTTTAGAGGTTTTGAAAGCTTAGTCATTAGGCT
CTTAACAACTGTTAATAAACCCCTCAATTACTGGTTTAGTACGGATCAAAAAGTCGAAAAAGTTATCTCTGGAAGAGGTC
TCTACCTTTTCTCTGGTCCTGTAGGGTCGGGGAAAACGAGTCTCATGTATCAGCTACTGACACGCATAGCAAAGAATAAA
CAAGTCATAACAATTGAAGATCCAGTTGAGATTCAAGAGGCTAGCTTGTTACAAATTCAAGTGAATGAAAGTATTGGAAT
GACTTATGATAATCTTATTAAACTTTCCCTTAGACATCGTCCAGATTATTTGATTATTGGAGAGATTCGTGATGCTGAAA
CCGCCAAGGCAGTTATTAGAGCAAGCTTAACAGGAGCTGTAGTCTTTTCTACTATTCATGCCAAAAGTATTCCAGGAGTA
TATAAAAGATTATTAGAACTAGGTATCAAAAGAGAAGAGATACAGCATACTCTAAAATTTATTGCTTACCAAAGGTTGAT
AGCAGGAGGAGGACTTATTGACTTTGCCATCGAGACATTCGAAACCCATTCCAATCAAAACTGGAATCAAAACCTTGATC
ACTTACTTGAACAAGGATATATCACTCAGGAACAAGCACTCTCGGAAAAAATTAGCGACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

64.217

100

0.642
  comYA Streptococcus mutans UA140

64.217

100

0.642
  comYA Streptococcus gordonii str. Challis substr. CH1

60.703

100

0.607
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

60.577

99.681

0.604
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

58.013

99.681

0.578
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

57.692

99.681

0.575
  comGA/cglA/cilD Streptococcus pneumoniae D39

57.692

99.681

0.575
  comGA/cglA/cilD Streptococcus pneumoniae R6

57.692

99.681

0.575
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

57.692

99.681

0.575
  comGA Lactococcus lactis subsp. cremoris KW2

52.885

99.681

0.527

Multiple sequence alignment