Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   FQT45_RS00710 Genome accession   NZ_LR595858
Coordinates   114126..115181 (+) Length   351 a.a.
NCBI ID   WP_370737006.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 109126..120181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS00695 (NCTC10228_00143) - 111076..112602 (-) 1527 WP_143880457.1 IS1182 family transposase -
  FQT45_RS00700 (NCTC10228_00144) - 112826..113191 (+) 366 WP_077323559.1 DUF1033 family protein -
  FQT45_RS00705 (NCTC10228_00145) comYA 113273..114214 (+) 942 WP_077323560.1 competence type IV pilus ATPase ComGA Machinery gene
  FQT45_RS00710 (NCTC10228_00146) comYB 114126..115181 (+) 1056 WP_370737006.1 competence type IV pilus assembly protein ComGB Machinery gene
  FQT45_RS00715 (NCTC10228_00147) comGD 115181..115609 (+) 429 WP_223837016.1 competence type IV pilus minor pilin ComGD -
  FQT45_RS00720 (NCTC10228_00148) comGE 115581..115874 (+) 294 WP_172604963.1 competence type IV pilus minor pilin ComGE -
  FQT45_RS00725 (NCTC10228_00149) comGF 115834..116295 (+) 462 WP_077323562.1 competence type IV pilus minor pilin ComGF -
  FQT45_RS00730 (NCTC10228_00150) comGG 116273..116674 (+) 402 WP_077323563.1 competence type IV pilus minor pilin ComGG -
  FQT45_RS00735 (NCTC10228_00151) comYH 116719..117675 (+) 957 WP_077323564.1 class I SAM-dependent methyltransferase Machinery gene
  FQT45_RS00740 (NCTC10228_00152) - 117731..118924 (+) 1194 WP_007895376.1 acetate kinase -
  FQT45_RS00745 (NCTC10228_00153) - 119266..119475 (+) 210 WP_007895522.1 helix-turn-helix transcriptional regulator -
  FQT45_RS00750 (NCTC10228_00154) - 119472..119924 (+) 453 WP_077323565.1 hypothetical protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40397.16 Da        Isoelectric Point: 9.7006

>NTDB_id=1128463 FQT45_RS00710 WP_370737006.1 114126..115181(+) (comYB) [Streptococcus pseudoporcinus strain NCTC10228]
MKTGIKTLITYLNKDISLRNKHSRKKLATKKQAKLVQLLHNLSQSGFNLAEMVAFLEKTQILDQAYLDLLKTDLLNGYSL
SEMMRHLGFSDGIITQLSLTEAHGNTKKCLGKIEDYMAQTQKIKQKTIEVVTYPIILITFLIVIVLGLRHYLMPQMEQET
TLAYFLNNFPVYLLSLSIIVLITVIALAIRWRKLKKMKQIIEYSRIPLLAPFLKLYMTAFYAREWGNLISQGIELSQIVT
IMSTEKSDLIKEIGLDMKQSFLEGQSFHEKVKTYPFFSDELSLMIEYGEIKGKLGQELDIYGQLIWDAYFRKLLQATQII
QPFIFMIVALIIVMIYAAMLLPMYHTIGGTI

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1128463 FQT45_RS00710 WP_370737006.1 114126..115181(+) (comYB) [Streptococcus pseudoporcinus strain NCTC10228]
ATCAAAACTGGAATCAAAACCTTGATCACTTACTTGAACAAGGATATATCACTCAGGAACAAGCACTCTCGGAAAAAATT
AGCGACTAAAAAACAGGCTAAGTTGGTTCAACTCCTACATAATTTAAGCCAAAGTGGCTTTAATCTAGCAGAAATGGTTG
CCTTTCTAGAAAAAACACAGATTTTAGACCAGGCTTATCTTGACTTGTTAAAGACTGATTTGTTAAATGGGTATAGCTTA
TCAGAAATGATGAGACATTTAGGATTTTCTGATGGGATTATTACCCAACTAAGCTTGACTGAAGCTCATGGCAATACCAA
AAAATGCTTGGGAAAAATTGAAGACTACATGGCACAGACACAAAAGATTAAGCAAAAGACAATTGAAGTTGTGACTTACC
CCATCATTCTCATCACCTTTTTAATTGTAATTGTCCTAGGCCTGAGACATTACTTAATGCCTCAGATGGAACAAGAAACC
ACTTTGGCCTATTTTCTTAATAATTTTCCAGTCTACCTACTAAGTCTATCAATTATTGTCCTGATTACGGTCATTGCTTT
AGCTATCAGATGGCGGAAACTTAAAAAGATGAAACAGATAATAGAGTATAGTCGGATACCCTTGCTAGCACCCTTCTTAA
AGCTTTATATGACAGCCTTTTATGCGCGTGAGTGGGGAAATCTAATCAGTCAAGGTATTGAACTAAGTCAAATAGTAACC
ATTATGAGTACTGAAAAATCTGACTTGATAAAAGAAATAGGCTTAGATATGAAACAATCATTTCTTGAGGGGCAGAGTTT
CCACGAAAAAGTGAAGACATATCCCTTCTTCAGTGATGAGTTGAGTTTGATGATTGAATATGGTGAAATTAAAGGGAAAT
TAGGCCAAGAACTGGATATTTATGGCCAACTGATATGGGACGCCTATTTTCGAAAGCTCTTACAGGCGACGCAAATCATC
CAACCTTTTATATTTATGATTGTCGCTTTGATCATTGTCATGATTTATGCCGCTATGCTATTGCCGATGTATCACACGAT
TGGAGGAACAATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(222-342)

Type II secretion system (T2SS), protein F (T2SSF)

(36-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

51.176

96.866

0.496
  comYB Streptococcus mutans UA159

51.176

96.866

0.496
  comGB/cglB Streptococcus mitis SK321

47.447

94.872

0.45
  comGB/cglB Streptococcus mitis NCTC 12261

47.147

94.872

0.447
  comYB Streptococcus gordonii str. Challis substr. CH1

44.118

96.866

0.427
  comGB/cglB Streptococcus pneumoniae Rx1

45.045

94.872

0.427
  comGB/cglB Streptococcus pneumoniae D39

45.045

94.872

0.427
  comGB/cglB Streptococcus pneumoniae R6

45.045

94.872

0.427
  comGB/cglB Streptococcus pneumoniae TIGR4

45.045

94.872

0.427
  comGB Lactococcus lactis subsp. cremoris KW2

42.249

93.732

0.396

Multiple sequence alignment