Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | E5CHR_RS06835 | Genome accession | NZ_LR594675 |
| Coordinates | 1451643..1452866 (-) | Length | 407 a.a. |
| NCBI ID | WP_162578990.1 | Uniprot ID | A0A6P2EKC7 |
| Organism | Variovorax sp. PBS-H4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1446643..1457866
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5CHR_RS06810 (H4CHR_01360) | zapD | 1446681..1447436 (-) | 756 | WP_162578985.1 | cell division protein ZapD | - |
| E5CHR_RS06815 (H4CHR_01361) | - | 1447474..1448490 (-) | 1017 | WP_162578986.1 | HAD family hydrolase | - |
| E5CHR_RS06820 (H4CHR_01362) | - | 1448501..1449994 (-) | 1494 | WP_162578987.1 | MBOAT family protein | - |
| E5CHR_RS06825 (H4CHR_01363) | coaE | 1450079..1450720 (-) | 642 | WP_162578988.1 | dephospho-CoA kinase | - |
| E5CHR_RS06830 (H4CHR_01364) | - | 1450678..1451643 (-) | 966 | WP_162578989.1 | A24 family peptidase | - |
| E5CHR_RS06835 (H4CHR_01365) | pilC | 1451643..1452866 (-) | 1224 | WP_162578990.1 | type II secretion system F family protein | Machinery gene |
| E5CHR_RS06840 (H4CHR_01366) | pilB | 1452882..1454615 (-) | 1734 | WP_162578991.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 44513.32 Da Isoelectric Point: 9.6385
>NTDB_id=1128244 E5CHR_RS06835 WP_162578990.1 1451643..1452866(-) (pilC) [Variovorax sp. PBS-H4]
MATAAASRTALKEYVFEWEGKDRNGKVVRGEIRAAGENQVQAALRRQGVLASKIKKRRMRSGKAIKPKDIAIFTRQLATM
MKAGVPLLQAFDIVGRGNANPSVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATYME
KTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFSSFGADLPAPTLIVMGISEFFVAYWWLIFSVIGGGLYF
FFQAWKRNEKVQRFMDRLLLRVPIFGTLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYADATLKIQQEVST
GTSLTMAMTNANLFPSMVLQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSMYLPI
FKLGQVV
MATAAASRTALKEYVFEWEGKDRNGKVVRGEIRAAGENQVQAALRRQGVLASKIKKRRMRSGKAIKPKDIAIFTRQLATM
MKAGVPLLQAFDIVGRGNANPSVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATYME
KTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFSSFGADLPAPTLIVMGISEFFVAYWWLIFSVIGGGLYF
FFQAWKRNEKVQRFMDRLLLRVPIFGTLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYADATLKIQQEVST
GTSLTMAMTNANLFPSMVLQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSMYLPI
FKLGQVV
Nucleotide
Download Length: 1224 bp
>NTDB_id=1128244 E5CHR_RS06835 WP_162578990.1 1451643..1452866(-) (pilC) [Variovorax sp. PBS-H4]
ATGGCAACAGCAGCAGCATCCCGGACGGCGCTCAAGGAATACGTCTTCGAGTGGGAAGGCAAGGACCGCAACGGCAAGGT
GGTGCGTGGCGAAATCCGCGCGGCCGGCGAGAACCAGGTCCAGGCCGCGCTGCGCCGCCAGGGCGTGCTGGCCTCGAAGA
TCAAGAAGCGGCGGATGCGCTCGGGCAAGGCCATCAAGCCCAAGGACATCGCCATCTTCACCCGCCAGCTGGCAACCATG
ATGAAGGCCGGCGTCCCGCTGCTGCAGGCCTTCGACATCGTGGGCCGCGGCAATGCCAATCCAAGCGTTGCCAAGCTGCT
CAACGACATTCGCAGTGATGTCGAGACCGGGACCTCGCTGTCCGCCGCCTTCCGCAAGTTCCCGAAGTACTTCGACAACC
TCTACTGCAACCTGGTTGAAGCCGGCGAGGCCGCCGGTATTCTGGAAGAGCTGCTCGACCGCCTCGCCACCTACATGGAG
AAGACGGAGGCCATCAAATCGAAGATCAAGTCGGCGTTGATGTATCCCACCTCGGTGGTCGTCGTGGCCTTCGTGGTGGT
CGCGATCATCATGATCTTCGTGATCCCGGCCTTCAAGCAGGTGTTCAGCTCCTTCGGCGCCGACCTGCCGGCACCGACGC
TCATCGTGATGGGAATCAGCGAGTTCTTCGTCGCCTATTGGTGGCTGATCTTCAGCGTGATCGGCGGTGGTCTGTACTTC
TTCTTCCAGGCGTGGAAGCGCAACGAAAAGGTCCAGCGCTTCATGGACCGCCTGTTGCTGCGTGTGCCGATCTTCGGCAC
GCTGATCGAGAAATCCTGCGTGGCCCGCTGGACCCGAACCCTCGCCACCATGTTCGCGGCGGGCGTGCCGCTCGTGGAGG
CCCTCGATTCGGTGGGCGGCGCGTCGGGCAACACCGTATACGCAGACGCCACGCTCAAGATCCAGCAGGAAGTCTCGACC
GGTACCAGCCTGACGATGGCCATGACCAACGCCAACCTGTTCCCCTCGATGGTGCTCCAGATGACCGCCATCGGCGAGGA
GTCCGGCTCCATCGACCACATGCTGGGCAAGGCTGCCGACTTCTACGAGTCGGAGGTCGATGACATGGTCGCGGGCCTGT
CGAGCCTGATGGAGCCGATCATCATCGTGTTCCTCGGGGTGATCATCGGTGGCATCGTGGTCTCGATGTACCTGCCTATC
TTCAAGCTCGGCCAGGTCGTCTGA
ATGGCAACAGCAGCAGCATCCCGGACGGCGCTCAAGGAATACGTCTTCGAGTGGGAAGGCAAGGACCGCAACGGCAAGGT
GGTGCGTGGCGAAATCCGCGCGGCCGGCGAGAACCAGGTCCAGGCCGCGCTGCGCCGCCAGGGCGTGCTGGCCTCGAAGA
TCAAGAAGCGGCGGATGCGCTCGGGCAAGGCCATCAAGCCCAAGGACATCGCCATCTTCACCCGCCAGCTGGCAACCATG
ATGAAGGCCGGCGTCCCGCTGCTGCAGGCCTTCGACATCGTGGGCCGCGGCAATGCCAATCCAAGCGTTGCCAAGCTGCT
CAACGACATTCGCAGTGATGTCGAGACCGGGACCTCGCTGTCCGCCGCCTTCCGCAAGTTCCCGAAGTACTTCGACAACC
TCTACTGCAACCTGGTTGAAGCCGGCGAGGCCGCCGGTATTCTGGAAGAGCTGCTCGACCGCCTCGCCACCTACATGGAG
AAGACGGAGGCCATCAAATCGAAGATCAAGTCGGCGTTGATGTATCCCACCTCGGTGGTCGTCGTGGCCTTCGTGGTGGT
CGCGATCATCATGATCTTCGTGATCCCGGCCTTCAAGCAGGTGTTCAGCTCCTTCGGCGCCGACCTGCCGGCACCGACGC
TCATCGTGATGGGAATCAGCGAGTTCTTCGTCGCCTATTGGTGGCTGATCTTCAGCGTGATCGGCGGTGGTCTGTACTTC
TTCTTCCAGGCGTGGAAGCGCAACGAAAAGGTCCAGCGCTTCATGGACCGCCTGTTGCTGCGTGTGCCGATCTTCGGCAC
GCTGATCGAGAAATCCTGCGTGGCCCGCTGGACCCGAACCCTCGCCACCATGTTCGCGGCGGGCGTGCCGCTCGTGGAGG
CCCTCGATTCGGTGGGCGGCGCGTCGGGCAACACCGTATACGCAGACGCCACGCTCAAGATCCAGCAGGAAGTCTCGACC
GGTACCAGCCTGACGATGGCCATGACCAACGCCAACCTGTTCCCCTCGATGGTGCTCCAGATGACCGCCATCGGCGAGGA
GTCCGGCTCCATCGACCACATGCTGGGCAAGGCTGCCGACTTCTACGAGTCGGAGGTCGATGACATGGTCGCGGGCCTGT
CGAGCCTGATGGAGCCGATCATCATCGTGTTCCTCGGGGTGATCATCGGTGGCATCGTGGTCTCGATGTACCTGCCTATC
TTCAAGCTCGGCCAGGTCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
54.208 |
99.263 |
0.538 |
| pilG | Neisseria gonorrhoeae MS11 |
52.632 |
98.034 |
0.516 |
| pilG | Neisseria meningitidis 44/76-A |
52.381 |
98.034 |
0.514 |
| pilC | Acinetobacter baylyi ADP1 |
51.256 |
97.789 |
0.501 |
| pilC | Legionella pneumophila strain ERS1305867 |
50.253 |
97.297 |
0.489 |
| pilC | Acinetobacter baumannii D1279779 |
49.37 |
97.543 |
0.482 |
| pilC | Vibrio cholerae strain A1552 |
41.606 |
100 |
0.42 |
| pilC | Thermus thermophilus HB27 |
40.148 |
99.754 |
0.4 |
| pilC | Vibrio campbellii strain DS40M4 |
39.312 |
100 |
0.393 |