Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | E5CHR_RS06840 | Genome accession | NZ_LR594675 |
| Coordinates | 1452882..1454615 (-) | Length | 577 a.a. |
| NCBI ID | WP_162578991.1 | Uniprot ID | A0A6P2EHH6 |
| Organism | Variovorax sp. PBS-H4 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1447882..1459615
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5CHR_RS06820 (H4CHR_01362) | - | 1448501..1449994 (-) | 1494 | WP_162578987.1 | MBOAT family protein | - |
| E5CHR_RS06825 (H4CHR_01363) | coaE | 1450079..1450720 (-) | 642 | WP_162578988.1 | dephospho-CoA kinase | - |
| E5CHR_RS06830 (H4CHR_01364) | - | 1450678..1451643 (-) | 966 | WP_162578989.1 | A24 family peptidase | - |
| E5CHR_RS06835 (H4CHR_01365) | pilC | 1451643..1452866 (-) | 1224 | WP_162578990.1 | type II secretion system F family protein | Machinery gene |
| E5CHR_RS06840 (H4CHR_01366) | pilB | 1452882..1454615 (-) | 1734 | WP_162578991.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 577 a.a. Molecular weight: 62493.80 Da Isoelectric Point: 5.6405
>NTDB_id=1128245 E5CHR_RS06840 WP_162578991.1 1452882..1454615(-) (pilB) [Variovorax sp. PBS-H4]
MAAADPLAKESASIALPGLARALISAGKLPVRTAEEIYQKSLSGRSSFIAELTGTGAVSAADLAHTLSSAFGAPLLDLDA
VDSQRLPKDLLDSKLCQAYRVVVLSKRNNRLIVATADPSDQQAAEKIKFASQMGVDWVVAEYDKLSRMIEAAAVSAAETI
DSIVGAEFEFDDSSIAESAEANEAAIAEVEDAPVVRFLHKMLLDAFSMRASDIHFEPYEHQYRVRFRIDGELREIATPPT
VIKDKLASRIKVISRLDISEKRVPQDGRMKLKIGADRVIDFRVSTLPTLFGEKIVVRILDPSSARLGIDALGYDADEKER
LMQAIGRPYGMVLVTGPTGSGKTVSLYTCLNLLNKPGVNIATAEDPSEINLPGVNQVNVNDKAGLTFAAALRAFLRQDPD
IIMVGEIRDLETADIAIKAAQTGHLVLSTLHTNDAPTTLTRMRNMGIAPFNIASSVILITAQRLARRLCTVCKAPIEVPR
EALLEAGFKDRDIDGTWKPYKPVGCPSCNGGYKGRVGIYQVMPISEEIQKIILRDGSALEIARQSEAEGVRSLRSSGLRK
VMQGLTSLEEVLAVTNE
MAAADPLAKESASIALPGLARALISAGKLPVRTAEEIYQKSLSGRSSFIAELTGTGAVSAADLAHTLSSAFGAPLLDLDA
VDSQRLPKDLLDSKLCQAYRVVVLSKRNNRLIVATADPSDQQAAEKIKFASQMGVDWVVAEYDKLSRMIEAAAVSAAETI
DSIVGAEFEFDDSSIAESAEANEAAIAEVEDAPVVRFLHKMLLDAFSMRASDIHFEPYEHQYRVRFRIDGELREIATPPT
VIKDKLASRIKVISRLDISEKRVPQDGRMKLKIGADRVIDFRVSTLPTLFGEKIVVRILDPSSARLGIDALGYDADEKER
LMQAIGRPYGMVLVTGPTGSGKTVSLYTCLNLLNKPGVNIATAEDPSEINLPGVNQVNVNDKAGLTFAAALRAFLRQDPD
IIMVGEIRDLETADIAIKAAQTGHLVLSTLHTNDAPTTLTRMRNMGIAPFNIASSVILITAQRLARRLCTVCKAPIEVPR
EALLEAGFKDRDIDGTWKPYKPVGCPSCNGGYKGRVGIYQVMPISEEIQKIILRDGSALEIARQSEAEGVRSLRSSGLRK
VMQGLTSLEEVLAVTNE
Nucleotide
Download Length: 1734 bp
>NTDB_id=1128245 E5CHR_RS06840 WP_162578991.1 1452882..1454615(-) (pilB) [Variovorax sp. PBS-H4]
ATGGCCGCCGCTGACCCTCTCGCCAAAGAAAGCGCATCGATCGCCCTCCCCGGGCTGGCGCGCGCCTTGATCTCCGCCGG
CAAGCTGCCGGTGAGGACCGCGGAGGAGATCTATCAGAAGTCGCTCAGCGGGCGAAGCAGCTTCATCGCCGAGCTGACCG
GCACCGGCGCGGTGTCTGCGGCGGATCTCGCCCACACCCTGTCGAGCGCGTTCGGCGCCCCCCTGCTCGACCTTGACGCC
GTCGATTCCCAGCGCCTGCCCAAGGACCTGCTGGATTCCAAGCTGTGTCAGGCCTACCGGGTGGTGGTGCTCAGCAAGCG
CAACAACCGTCTCATCGTCGCAACAGCCGACCCGTCCGACCAGCAGGCGGCGGAAAAAATAAAGTTCGCGTCCCAGATGG
GCGTGGACTGGGTCGTTGCCGAGTACGACAAGCTCTCGCGCATGATCGAGGCGGCGGCGGTGAGCGCCGCCGAAACGATC
GACAGCATCGTCGGCGCCGAGTTCGAGTTCGACGACTCCTCGATCGCCGAGAGCGCCGAGGCGAACGAAGCCGCGATCGC
CGAGGTCGAGGATGCGCCGGTCGTCCGCTTCCTGCACAAGATGCTGCTCGACGCCTTCAGCATGCGGGCGTCGGACATCC
ACTTCGAGCCTTACGAGCATCAGTACCGCGTGCGCTTCCGGATCGACGGCGAGCTGCGCGAGATCGCCACGCCGCCCACG
GTCATCAAGGACAAGCTGGCTTCGCGCATCAAGGTGATTTCCCGGCTGGACATCTCCGAGAAGCGGGTGCCGCAGGACGG
CCGCATGAAGCTCAAGATCGGCGCCGACCGGGTGATCGACTTCCGCGTCAGCACCCTGCCCACGCTGTTCGGCGAGAAGA
TCGTGGTGCGTATCCTCGACCCGAGCAGCGCGCGCCTGGGCATCGATGCCCTGGGCTATGACGCCGACGAGAAAGAGCGG
CTGATGCAAGCCATCGGCCGCCCCTACGGCATGGTGCTGGTCACCGGGCCGACCGGCTCGGGCAAGACGGTTTCGCTCTA
CACCTGCCTGAACCTGCTGAACAAGCCGGGCGTCAACATCGCCACGGCCGAGGACCCATCCGAAATCAACCTTCCCGGGG
TCAACCAGGTCAACGTCAACGACAAGGCGGGTCTGACCTTCGCGGCGGCGCTGCGCGCTTTCCTGCGCCAGGACCCGGAC
ATCATCATGGTCGGCGAAATCCGCGACCTGGAAACCGCCGACATCGCGATCAAGGCCGCGCAAACCGGCCACCTGGTGCT
GTCGACCCTGCACACCAACGACGCACCGACCACGCTGACGCGGATGCGCAACATGGGCATCGCGCCCTTCAACATCGCCT
CCAGCGTGATCCTGATCACCGCGCAGCGGCTCGCGCGCCGGCTGTGCACCGTATGCAAGGCGCCAATCGAGGTGCCCAGG
GAGGCGCTGCTCGAAGCCGGCTTCAAGGACCGCGACATCGACGGCACCTGGAAGCCCTACAAGCCCGTCGGCTGCCCGTC
CTGCAACGGCGGCTACAAGGGCCGCGTGGGCATCTACCAGGTGATGCCGATCTCCGAGGAAATCCAGAAGATCATCCTGC
GCGATGGAAGCGCGCTCGAGATCGCCCGGCAATCCGAGGCCGAGGGCGTGCGCTCGCTGCGCAGTTCCGGGCTGCGGAAG
GTCATGCAGGGCCTGACCTCTCTCGAAGAAGTGCTCGCGGTCACCAACGAATAG
ATGGCCGCCGCTGACCCTCTCGCCAAAGAAAGCGCATCGATCGCCCTCCCCGGGCTGGCGCGCGCCTTGATCTCCGCCGG
CAAGCTGCCGGTGAGGACCGCGGAGGAGATCTATCAGAAGTCGCTCAGCGGGCGAAGCAGCTTCATCGCCGAGCTGACCG
GCACCGGCGCGGTGTCTGCGGCGGATCTCGCCCACACCCTGTCGAGCGCGTTCGGCGCCCCCCTGCTCGACCTTGACGCC
GTCGATTCCCAGCGCCTGCCCAAGGACCTGCTGGATTCCAAGCTGTGTCAGGCCTACCGGGTGGTGGTGCTCAGCAAGCG
CAACAACCGTCTCATCGTCGCAACAGCCGACCCGTCCGACCAGCAGGCGGCGGAAAAAATAAAGTTCGCGTCCCAGATGG
GCGTGGACTGGGTCGTTGCCGAGTACGACAAGCTCTCGCGCATGATCGAGGCGGCGGCGGTGAGCGCCGCCGAAACGATC
GACAGCATCGTCGGCGCCGAGTTCGAGTTCGACGACTCCTCGATCGCCGAGAGCGCCGAGGCGAACGAAGCCGCGATCGC
CGAGGTCGAGGATGCGCCGGTCGTCCGCTTCCTGCACAAGATGCTGCTCGACGCCTTCAGCATGCGGGCGTCGGACATCC
ACTTCGAGCCTTACGAGCATCAGTACCGCGTGCGCTTCCGGATCGACGGCGAGCTGCGCGAGATCGCCACGCCGCCCACG
GTCATCAAGGACAAGCTGGCTTCGCGCATCAAGGTGATTTCCCGGCTGGACATCTCCGAGAAGCGGGTGCCGCAGGACGG
CCGCATGAAGCTCAAGATCGGCGCCGACCGGGTGATCGACTTCCGCGTCAGCACCCTGCCCACGCTGTTCGGCGAGAAGA
TCGTGGTGCGTATCCTCGACCCGAGCAGCGCGCGCCTGGGCATCGATGCCCTGGGCTATGACGCCGACGAGAAAGAGCGG
CTGATGCAAGCCATCGGCCGCCCCTACGGCATGGTGCTGGTCACCGGGCCGACCGGCTCGGGCAAGACGGTTTCGCTCTA
CACCTGCCTGAACCTGCTGAACAAGCCGGGCGTCAACATCGCCACGGCCGAGGACCCATCCGAAATCAACCTTCCCGGGG
TCAACCAGGTCAACGTCAACGACAAGGCGGGTCTGACCTTCGCGGCGGCGCTGCGCGCTTTCCTGCGCCAGGACCCGGAC
ATCATCATGGTCGGCGAAATCCGCGACCTGGAAACCGCCGACATCGCGATCAAGGCCGCGCAAACCGGCCACCTGGTGCT
GTCGACCCTGCACACCAACGACGCACCGACCACGCTGACGCGGATGCGCAACATGGGCATCGCGCCCTTCAACATCGCCT
CCAGCGTGATCCTGATCACCGCGCAGCGGCTCGCGCGCCGGCTGTGCACCGTATGCAAGGCGCCAATCGAGGTGCCCAGG
GAGGCGCTGCTCGAAGCCGGCTTCAAGGACCGCGACATCGACGGCACCTGGAAGCCCTACAAGCCCGTCGGCTGCCCGTC
CTGCAACGGCGGCTACAAGGGCCGCGTGGGCATCTACCAGGTGATGCCGATCTCCGAGGAAATCCAGAAGATCATCCTGC
GCGATGGAAGCGCGCTCGAGATCGCCCGGCAATCCGAGGCCGAGGGCGTGCGCTCGCTGCGCAGTTCCGGGCTGCGGAAG
GTCATGCAGGGCCTGACCTCTCTCGAAGAAGTGCTCGCGGTCACCAACGAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baylyi ADP1 |
54.902 |
97.227 |
0.534 |
| pilB | Acinetobacter baumannii D1279779 |
54.545 |
97.227 |
0.53 |
| pilF | Neisseria gonorrhoeae MS11 |
52.931 |
97.574 |
0.516 |
| pilB | Legionella pneumophila strain ERS1305867 |
49.033 |
98.614 |
0.484 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
45.088 |
98.787 |
0.445 |
| pilB | Vibrio campbellii strain DS40M4 |
45.648 |
97.574 |
0.445 |
| pilB | Vibrio cholerae strain A1552 |
48.462 |
90.121 |
0.437 |
| pilF | Thermus thermophilus HB27 |
40.526 |
98.787 |
0.4 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.468 |
94.454 |
0.392 |