Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | G3W89_RS06585 | Genome accession | NZ_LR594659 |
| Coordinates | 1386408..1387631 (-) | Length | 407 a.a. |
| NCBI ID | WP_162573338.1 | Uniprot ID | A0A6P2E894 |
| Organism | Variovorax sp. PBL-H6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1381408..1392631
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3W89_RS06560 (H6CHR_01309) | zapD | 1381449..1382204 (-) | 756 | WP_162573333.1 | cell division protein ZapD | - |
| G3W89_RS06565 (H6CHR_01310) | - | 1382242..1383258 (-) | 1017 | WP_162573334.1 | HAD family hydrolase | - |
| G3W89_RS06570 (H6CHR_01311) | - | 1383269..1384762 (-) | 1494 | WP_162573335.1 | MBOAT family protein | - |
| G3W89_RS06575 (H6CHR_01312) | coaE | 1384847..1385485 (-) | 639 | WP_162573336.1 | dephospho-CoA kinase | - |
| G3W89_RS06580 (H6CHR_01313) | - | 1385443..1386408 (-) | 966 | WP_162573337.1 | A24 family peptidase | - |
| G3W89_RS06585 (H6CHR_01314) | pilC | 1386408..1387631 (-) | 1224 | WP_162573338.1 | type II secretion system F family protein | Machinery gene |
| G3W89_RS06590 (H6CHR_01315) | pilB | 1387647..1389380 (-) | 1734 | WP_162573339.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 44441.21 Da Isoelectric Point: 9.6385
>NTDB_id=1128165 G3W89_RS06585 WP_162573338.1 1386408..1387631(-) (pilC) [Variovorax sp. PBL-H6]
MATAAASRTALKEYVFEWEGKDRNGKVVRGEVRAAGENQVQAALRRQGVLASKIKKRRMRSGKAIKPKDIAIFTRQLATM
MKAGVPLLQAFDIVGRGNANPSVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATYME
KTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFSSFGADLPAPTLIVMGISEFFVAYWWLIFGVIGGGLYF
FFQAWKRNEKVQRFMDRLLLRVPIFGTLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATVKIQQEVST
GTSLTMAMTNANLFPSMVLQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSMYLPI
FKLGQVV
MATAAASRTALKEYVFEWEGKDRNGKVVRGEVRAAGENQVQAALRRQGVLASKIKKRRMRSGKAIKPKDIAIFTRQLATM
MKAGVPLLQAFDIVGRGNANPSVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATYME
KTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFSSFGADLPAPTLIVMGISEFFVAYWWLIFGVIGGGLYF
FFQAWKRNEKVQRFMDRLLLRVPIFGTLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATVKIQQEVST
GTSLTMAMTNANLFPSMVLQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSMYLPI
FKLGQVV
Nucleotide
Download Length: 1224 bp
>NTDB_id=1128165 G3W89_RS06585 WP_162573338.1 1386408..1387631(-) (pilC) [Variovorax sp. PBL-H6]
ATGGCAACAGCAGCAGCATCCCGGACGGCGCTCAAGGAATACGTCTTCGAGTGGGAAGGCAAGGACCGCAACGGCAAGGT
GGTGCGCGGCGAGGTCCGGGCCGCCGGCGAGAACCAGGTCCAGGCCGCGCTGCGTCGCCAGGGAGTGCTGGCCTCGAAGA
TCAAGAAGCGGCGCATGCGCTCCGGCAAGGCCATCAAGCCGAAGGACATCGCCATCTTCACGCGCCAGCTGGCGACCATG
ATGAAGGCGGGCGTGCCGCTGCTGCAGGCCTTCGACATCGTAGGACGCGGCAATGCCAACCCGAGCGTGGCCAAGCTGCT
CAACGACATTCGCAGCGACGTCGAGACCGGCACCTCCCTGTCCGCCGCCTTCCGCAAGTTCCCGAAGTACTTCGACAACC
TCTATTGCAACCTGGTCGAGGCCGGCGAGGCCGCCGGTATCCTGGAAGAACTGCTCGACCGCCTTGCCACCTACATGGAG
AAGACGGAGGCCATCAAGTCGAAGATCAAGTCGGCGCTGATGTATCCCACCTCGGTGGTCGTGGTCGCCTTCGTGGTGGT
CGCGATCATCATGATCTTCGTGATCCCGGCCTTCAAGCAGGTGTTCAGTTCCTTCGGCGCCGACCTGCCGGCGCCGACGC
TCATCGTGATGGGGATCAGCGAATTCTTCGTCGCCTACTGGTGGCTGATCTTCGGTGTGATCGGCGGCGGGCTGTACTTC
TTCTTCCAGGCCTGGAAGCGCAACGAAAAGGTCCAGCGCTTCATGGACCGCTTGCTGCTGCGCGTGCCGATCTTCGGCAC
GCTGATCGAGAAATCCTGCGTGGCCCGATGGACCCGCACCCTGGCCACCATGTTCGCGGCGGGTGTGCCGCTCGTGGAGG
CCCTTGATTCGGTGGGCGGCGCTTCAGGCAACACGGTGTACGGCGACGCCACGGTCAAGATCCAGCAGGAGGTCTCGACC
GGCACCAGCCTGACGATGGCCATGACCAATGCCAACCTGTTCCCCTCGATGGTCCTGCAGATGACCGCCATCGGCGAGGA
GTCCGGGTCCATCGACCACATGCTGGGCAAGGCTGCCGACTTCTATGAATCGGAGGTCGACGACATGGTCGCGGGCCTGT
CGAGCCTGATGGAGCCGATCATCATCGTGTTCCTCGGGGTGATCATCGGTGGCATCGTGGTCTCGATGTACCTGCCCATC
TTCAAGCTCGGCCAGGTCGTCTGA
ATGGCAACAGCAGCAGCATCCCGGACGGCGCTCAAGGAATACGTCTTCGAGTGGGAAGGCAAGGACCGCAACGGCAAGGT
GGTGCGCGGCGAGGTCCGGGCCGCCGGCGAGAACCAGGTCCAGGCCGCGCTGCGTCGCCAGGGAGTGCTGGCCTCGAAGA
TCAAGAAGCGGCGCATGCGCTCCGGCAAGGCCATCAAGCCGAAGGACATCGCCATCTTCACGCGCCAGCTGGCGACCATG
ATGAAGGCGGGCGTGCCGCTGCTGCAGGCCTTCGACATCGTAGGACGCGGCAATGCCAACCCGAGCGTGGCCAAGCTGCT
CAACGACATTCGCAGCGACGTCGAGACCGGCACCTCCCTGTCCGCCGCCTTCCGCAAGTTCCCGAAGTACTTCGACAACC
TCTATTGCAACCTGGTCGAGGCCGGCGAGGCCGCCGGTATCCTGGAAGAACTGCTCGACCGCCTTGCCACCTACATGGAG
AAGACGGAGGCCATCAAGTCGAAGATCAAGTCGGCGCTGATGTATCCCACCTCGGTGGTCGTGGTCGCCTTCGTGGTGGT
CGCGATCATCATGATCTTCGTGATCCCGGCCTTCAAGCAGGTGTTCAGTTCCTTCGGCGCCGACCTGCCGGCGCCGACGC
TCATCGTGATGGGGATCAGCGAATTCTTCGTCGCCTACTGGTGGCTGATCTTCGGTGTGATCGGCGGCGGGCTGTACTTC
TTCTTCCAGGCCTGGAAGCGCAACGAAAAGGTCCAGCGCTTCATGGACCGCTTGCTGCTGCGCGTGCCGATCTTCGGCAC
GCTGATCGAGAAATCCTGCGTGGCCCGATGGACCCGCACCCTGGCCACCATGTTCGCGGCGGGTGTGCCGCTCGTGGAGG
CCCTTGATTCGGTGGGCGGCGCTTCAGGCAACACGGTGTACGGCGACGCCACGGTCAAGATCCAGCAGGAGGTCTCGACC
GGCACCAGCCTGACGATGGCCATGACCAATGCCAACCTGTTCCCCTCGATGGTCCTGCAGATGACCGCCATCGGCGAGGA
GTCCGGGTCCATCGACCACATGCTGGGCAAGGCTGCCGACTTCTATGAATCGGAGGTCGACGACATGGTCGCGGGCCTGT
CGAGCCTGATGGAGCCGATCATCATCGTGTTCCTCGGGGTGATCATCGGTGGCATCGTGGTCTCGATGTACCTGCCCATC
TTCAAGCTCGGCCAGGTCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
54.208 |
99.263 |
0.538 |
| pilG | Neisseria gonorrhoeae MS11 |
52.882 |
98.034 |
0.518 |
| pilG | Neisseria meningitidis 44/76-A |
52.632 |
98.034 |
0.516 |
| pilC | Acinetobacter baylyi ADP1 |
51.005 |
97.789 |
0.499 |
| pilC | Legionella pneumophila strain ERS1305867 |
50 |
97.297 |
0.486 |
| pilC | Acinetobacter baumannii D1279779 |
49.37 |
97.543 |
0.482 |
| pilC | Vibrio cholerae strain A1552 |
41.606 |
100 |
0.42 |
| pilC | Vibrio campbellii strain DS40M4 |
40.049 |
100 |
0.4 |
| pilC | Thermus thermophilus HB27 |
39.655 |
99.754 |
0.396 |