Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | G3W89_RS06590 | Genome accession | NZ_LR594659 |
| Coordinates | 1387647..1389380 (-) | Length | 577 a.a. |
| NCBI ID | WP_162573339.1 | Uniprot ID | A0A6P2EB49 |
| Organism | Variovorax sp. PBL-H6 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1382647..1394380
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3W89_RS06570 (H6CHR_01311) | - | 1383269..1384762 (-) | 1494 | WP_162573335.1 | MBOAT family protein | - |
| G3W89_RS06575 (H6CHR_01312) | coaE | 1384847..1385485 (-) | 639 | WP_162573336.1 | dephospho-CoA kinase | - |
| G3W89_RS06580 (H6CHR_01313) | - | 1385443..1386408 (-) | 966 | WP_162573337.1 | A24 family peptidase | - |
| G3W89_RS06585 (H6CHR_01314) | pilC | 1386408..1387631 (-) | 1224 | WP_162573338.1 | type II secretion system F family protein | Machinery gene |
| G3W89_RS06590 (H6CHR_01315) | pilB | 1387647..1389380 (-) | 1734 | WP_162573339.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 577 a.a. Molecular weight: 62469.73 Da Isoelectric Point: 5.6386
>NTDB_id=1128166 G3W89_RS06590 WP_162573339.1 1387647..1389380(-) (pilB) [Variovorax sp. PBL-H6]
MAAADPLAKESASIALPGLARALISAGKLPAKTAEEIYQKSLSGRSSFIAELTGTGAVSAADLAHTLSSAFGAPLLDLDA
VDSQRLPKDLLDSKLCQAYRVVVLSKRNNRLIVATADPSDQQAAEKIKFASQMGVDWVVAEYDKLSRMIEAAAVSAAETI
DSIVGAEFEFDDSSIAESADANEAAIAEVEDAPVVRFLHKMLLDAFSMRASDIHFEPYEHQYRVRFRVDGELREIATPPT
VIKDKLASRIKVISRLDISEKRVPQDGRMKLKIGPERVIDFRVSTLPTLFGEKIVVRILDPSSARLGIDALGYDADEKER
LMQAIGRPYGMVLVTGPTGSGKTVSLYTCLNLLNKPGVNIATAEDPSEINLPGVNQVNVNDKAGLTFATALRAFLRQDPD
IIMVGEIRDLETADIAIKAAQTGHLVLSTLHTNDAPTTLTRMRNMGIAPFNIASSVILITAQRLARRLCTVCKAPIEVPR
EALLDAGFKDRDIDGTWKPYRPVGCSSCNGGYKGRVGIYQVMPISEEIQKIILRDGSALEIAKQSEAEGVRSLRTSGLRK
VMQGLTSLEEVLAVTNE
MAAADPLAKESASIALPGLARALISAGKLPAKTAEEIYQKSLSGRSSFIAELTGTGAVSAADLAHTLSSAFGAPLLDLDA
VDSQRLPKDLLDSKLCQAYRVVVLSKRNNRLIVATADPSDQQAAEKIKFASQMGVDWVVAEYDKLSRMIEAAAVSAAETI
DSIVGAEFEFDDSSIAESADANEAAIAEVEDAPVVRFLHKMLLDAFSMRASDIHFEPYEHQYRVRFRVDGELREIATPPT
VIKDKLASRIKVISRLDISEKRVPQDGRMKLKIGPERVIDFRVSTLPTLFGEKIVVRILDPSSARLGIDALGYDADEKER
LMQAIGRPYGMVLVTGPTGSGKTVSLYTCLNLLNKPGVNIATAEDPSEINLPGVNQVNVNDKAGLTFATALRAFLRQDPD
IIMVGEIRDLETADIAIKAAQTGHLVLSTLHTNDAPTTLTRMRNMGIAPFNIASSVILITAQRLARRLCTVCKAPIEVPR
EALLDAGFKDRDIDGTWKPYRPVGCSSCNGGYKGRVGIYQVMPISEEIQKIILRDGSALEIAKQSEAEGVRSLRTSGLRK
VMQGLTSLEEVLAVTNE
Nucleotide
Download Length: 1734 bp
>NTDB_id=1128166 G3W89_RS06590 WP_162573339.1 1387647..1389380(-) (pilB) [Variovorax sp. PBL-H6]
ATGGCCGCTGCTGACCCTCTCGCCAAAGAAAGCGCATCAATCGCCCTGCCAGGGCTGGCCCGCGCCTTGATCTCCGCCGG
CAAGCTGCCGGCGAAGACTGCGGAGGAGATCTATCAGAAGTCCCTCAGCGGGCGCAGCAGCTTCATCGCCGAGCTGACCG
GCACCGGCGCGGTCTCCGCGGCGGATCTTGCCCATACGCTGTCGAGCGCCTTCGGCGCGCCCCTGCTCGACCTCGACGCC
GTCGATTCCCAGCGCCTGCCGAAGGACCTGCTGGACTCCAAGCTGTGCCAGGCCTATCGGGTCGTGGTGCTCAGCAAGCG
CAACAACCGTCTCATCGTCGCAACAGCCGACCCCTCGGACCAGCAGGCGGCGGAAAAAATAAAGTTCGCGTCGCAGATGG
GCGTGGATTGGGTCGTTGCCGAGTACGACAAGCTCTCCCGCATGATCGAGGCGGCGGCGGTGAGCGCCGCCGAAACCATC
GACAGCATCGTCGGCGCCGAGTTCGAGTTCGACGACTCCTCGATCGCCGAGAGTGCCGACGCGAACGAAGCGGCGATCGC
CGAGGTCGAGGACGCGCCGGTCGTCCGCTTCCTGCACAAGATGCTGCTCGACGCCTTCAGCATGCGCGCGTCGGACATCC
ACTTCGAGCCCTACGAGCACCAGTATCGCGTGCGCTTCCGGGTCGACGGCGAACTGCGCGAAATCGCCACGCCGCCCACC
GTCATCAAGGACAAGCTGGCCTCTCGCATCAAGGTGATCTCGCGGCTCGACATCTCCGAGAAACGCGTGCCGCAGGACGG
CCGCATGAAGCTCAAGATCGGCCCGGAGCGGGTGATCGATTTCCGCGTCAGCACCCTGCCCACGCTGTTCGGCGAGAAGA
TCGTGGTGCGTATCCTCGACCCGAGCAGCGCGCGCCTGGGCATCGATGCCCTGGGCTACGACGCCGACGAGAAAGAGCGG
CTGATGCAGGCCATCGGCCGTCCGTACGGCATGGTGCTGGTCACCGGGCCGACAGGCTCGGGCAAGACGGTCTCGCTCTA
CACCTGCCTGAACCTGCTGAACAAGCCCGGCGTCAACATCGCCACGGCGGAGGACCCGTCTGAAATCAACCTGCCCGGCG
TCAACCAGGTCAACGTCAACGACAAGGCAGGGCTGACCTTCGCAACCGCGCTGCGCGCCTTCCTGCGCCAGGATCCCGAC
ATCATCATGGTCGGCGAAATCCGCGACCTGGAAACCGCCGACATCGCGATCAAGGCTGCGCAAACCGGCCACCTGGTGCT
GTCGACCCTCCACACCAACGATGCCCCGACCACGCTGACGCGGATGCGCAACATGGGCATCGCGCCTTTCAACATCGCAT
CCAGCGTGATCCTCATCACCGCCCAGCGGCTGGCGCGCCGGCTGTGCACCGTGTGCAAGGCGCCGATCGAGGTGCCCAGG
GAAGCGCTGCTCGACGCCGGCTTCAAGGACCGTGACATCGACGGCACCTGGAAGCCCTACAGGCCCGTCGGCTGTTCTTC
ATGCAACGGCGGCTACAAGGGCCGGGTGGGCATCTACCAGGTGATGCCGATCTCCGAGGAGATCCAGAAGATCATCCTGC
GCGACGGCAGTGCGCTCGAGATCGCCAAGCAGTCCGAAGCCGAGGGCGTGCGCTCGCTGCGGACTTCCGGGCTGCGGAAA
GTCATGCAGGGCCTGACTTCCCTCGAAGAAGTGCTCGCGGTCACCAACGAATAG
ATGGCCGCTGCTGACCCTCTCGCCAAAGAAAGCGCATCAATCGCCCTGCCAGGGCTGGCCCGCGCCTTGATCTCCGCCGG
CAAGCTGCCGGCGAAGACTGCGGAGGAGATCTATCAGAAGTCCCTCAGCGGGCGCAGCAGCTTCATCGCCGAGCTGACCG
GCACCGGCGCGGTCTCCGCGGCGGATCTTGCCCATACGCTGTCGAGCGCCTTCGGCGCGCCCCTGCTCGACCTCGACGCC
GTCGATTCCCAGCGCCTGCCGAAGGACCTGCTGGACTCCAAGCTGTGCCAGGCCTATCGGGTCGTGGTGCTCAGCAAGCG
CAACAACCGTCTCATCGTCGCAACAGCCGACCCCTCGGACCAGCAGGCGGCGGAAAAAATAAAGTTCGCGTCGCAGATGG
GCGTGGATTGGGTCGTTGCCGAGTACGACAAGCTCTCCCGCATGATCGAGGCGGCGGCGGTGAGCGCCGCCGAAACCATC
GACAGCATCGTCGGCGCCGAGTTCGAGTTCGACGACTCCTCGATCGCCGAGAGTGCCGACGCGAACGAAGCGGCGATCGC
CGAGGTCGAGGACGCGCCGGTCGTCCGCTTCCTGCACAAGATGCTGCTCGACGCCTTCAGCATGCGCGCGTCGGACATCC
ACTTCGAGCCCTACGAGCACCAGTATCGCGTGCGCTTCCGGGTCGACGGCGAACTGCGCGAAATCGCCACGCCGCCCACC
GTCATCAAGGACAAGCTGGCCTCTCGCATCAAGGTGATCTCGCGGCTCGACATCTCCGAGAAACGCGTGCCGCAGGACGG
CCGCATGAAGCTCAAGATCGGCCCGGAGCGGGTGATCGATTTCCGCGTCAGCACCCTGCCCACGCTGTTCGGCGAGAAGA
TCGTGGTGCGTATCCTCGACCCGAGCAGCGCGCGCCTGGGCATCGATGCCCTGGGCTACGACGCCGACGAGAAAGAGCGG
CTGATGCAGGCCATCGGCCGTCCGTACGGCATGGTGCTGGTCACCGGGCCGACAGGCTCGGGCAAGACGGTCTCGCTCTA
CACCTGCCTGAACCTGCTGAACAAGCCCGGCGTCAACATCGCCACGGCGGAGGACCCGTCTGAAATCAACCTGCCCGGCG
TCAACCAGGTCAACGTCAACGACAAGGCAGGGCTGACCTTCGCAACCGCGCTGCGCGCCTTCCTGCGCCAGGATCCCGAC
ATCATCATGGTCGGCGAAATCCGCGACCTGGAAACCGCCGACATCGCGATCAAGGCTGCGCAAACCGGCCACCTGGTGCT
GTCGACCCTCCACACCAACGATGCCCCGACCACGCTGACGCGGATGCGCAACATGGGCATCGCGCCTTTCAACATCGCAT
CCAGCGTGATCCTCATCACCGCCCAGCGGCTGGCGCGCCGGCTGTGCACCGTGTGCAAGGCGCCGATCGAGGTGCCCAGG
GAAGCGCTGCTCGACGCCGGCTTCAAGGACCGTGACATCGACGGCACCTGGAAGCCCTACAGGCCCGTCGGCTGTTCTTC
ATGCAACGGCGGCTACAAGGGCCGGGTGGGCATCTACCAGGTGATGCCGATCTCCGAGGAGATCCAGAAGATCATCCTGC
GCGACGGCAGTGCGCTCGAGATCGCCAAGCAGTCCGAAGCCGAGGGCGTGCGCTCGCTGCGGACTTCCGGGCTGCGGAAA
GTCATGCAGGGCCTGACTTCCCTCGAAGAAGTGCTCGCGGTCACCAACGAATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baylyi ADP1 |
55.08 |
97.227 |
0.536 |
| pilB | Acinetobacter baumannii D1279779 |
54.545 |
97.227 |
0.53 |
| pilF | Neisseria gonorrhoeae MS11 |
53.464 |
97.574 |
0.522 |
| pilB | Legionella pneumophila strain ERS1305867 |
49.209 |
98.614 |
0.485 |
| pilB | Vibrio cholerae strain A1552 |
46.607 |
97.054 |
0.452 |
| pilB | Vibrio campbellii strain DS40M4 |
45.826 |
97.574 |
0.447 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
47.655 |
92.374 |
0.44 |
| pilF | Thermus thermophilus HB27 |
39.825 |
98.787 |
0.393 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.284 |
94.454 |
0.39 |