Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FGK96_RS00715 Genome accession   NZ_LR594036
Coordinates   115438..115833 (+) Length   131 a.a.
NCBI ID   WP_138080462.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 110438..120833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS00680 (NCTC10710_00145) - 110473..110925 (+) 453 WP_138080448.1 hypothetical protein -
  FGK96_RS00685 (NCTC10710_00146) - 110937..111584 (+) 648 WP_138080450.1 CPBP family intramembrane glutamic endopeptidase -
  FGK96_RS00690 (NCTC10710_00147) proC 111621..112391 (-) 771 WP_138080452.1 pyrroline-5-carboxylate reductase -
  FGK96_RS00695 (NCTC10710_00148) pepA 112409..113476 (-) 1068 WP_138080454.1 glutamyl aminopeptidase -
  FGK96_RS00700 (NCTC10710_00149) - 113673..113960 (+) 288 WP_138080456.1 DUF4651 domain-containing protein -
  FGK96_RS00705 (NCTC10710_00150) - 113953..114288 (+) 336 WP_138080458.1 thioredoxin family protein -
  FGK96_RS00710 (NCTC10710_00151) ytpR 114288..114914 (+) 627 WP_138080460.1 YtpR family tRNA-binding protein -
  FGK96_RS10535 (NCTC10710_00152) - 115132..115302 (-) 171 WP_232045783.1 hypothetical protein -
  FGK96_RS00715 (NCTC10710_00153) ssbA 115438..115833 (+) 396 WP_138080462.1 single-stranded DNA-binding protein Machinery gene
  FGK96_RS00720 (NCTC10710_00154) - 116303..117268 (+) 966 WP_138080464.1 ABC transporter substrate-binding protein -
  FGK96_RS00725 (NCTC10710_00155) - 117284..118246 (+) 963 WP_138083470.1 ABC transporter substrate-binding protein -
  FGK96_RS00730 (NCTC10710_00156) - 118266..119150 (+) 885 WP_138080466.1 ABC transporter permease -
  FGK96_RS00735 (NCTC10710_00157) - 119159..119962 (+) 804 WP_138080468.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14972.23 Da        Isoelectric Point: 7.7422

>NTDB_id=1127335 FGK96_RS00715 WP_138080462.1 115438..115833(+) (ssbA) [Streptococcus porcinus strain NCTC10710]
MYNKVIMIGRLVNHPDLIKTPKDKHVCRVSIAVNRRFKNAEGERQVDFVNLVLWGRLAESLASYGSKGSLISLDGELRIR
KYEKDGKTAYMTEVLCQSYQLLESRAQRAVRENNLADDLCDLVLDEEALPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1127335 FGK96_RS00715 WP_138080462.1 115438..115833(+) (ssbA) [Streptococcus porcinus strain NCTC10710]
ATGTATAATAAAGTAATTATGATTGGTCGATTAGTTAACCATCCCGACTTGATAAAGACCCCAAAAGATAAGCATGTGTG
CCGAGTTTCAATTGCTGTTAATCGCCGTTTTAAAAATGCTGAAGGTGAGCGTCAAGTTGATTTTGTTAATCTTGTTCTTT
GGGGACGATTGGCTGAAAGTCTAGCCTCGTATGGTAGCAAAGGTAGTCTGATTTCGCTTGATGGTGAGCTACGCATCCGC
AAGTACGAAAAAGATGGTAAGACGGCTTATATGACCGAAGTCCTATGCCAATCTTATCAACTTTTAGAGAGTCGAGCTCA
GCGGGCTGTTAGAGAAAACAACCTGGCTGACGACCTTTGTGATTTGGTTTTAGATGAAGAGGCCTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

68.702

100

0.687
  ssbB/cilA Streptococcus pneumoniae Rx1

68.702

100

0.687
  ssbB/cilA Streptococcus pneumoniae D39

68.702

100

0.687
  ssbB/cilA Streptococcus pneumoniae R6

68.702

100

0.687
  ssbB/cilA Streptococcus mitis NCTC 12261

68.702

100

0.687
  ssbB/cilA Streptococcus pneumoniae TIGR4

67.939

100

0.679
  ssbB/cilA Streptococcus mitis SK321

67.176

100

0.672
  ssbB Lactococcus lactis subsp. cremoris KW2

54.464

85.496

0.466
  ssb Latilactobacillus sakei subsp. sakei 23K

42.735

89.313

0.382

Multiple sequence alignment